Publications:

1. Human and Mouse Single Cortial Neuron Methylomes

2. Review: Finding the fifth base: Genome-wide sequencing of cytosine methylation

3. Genome-wide sequencing of cytosine methylation

4. Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond

5. Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the Arabidopsis Transcriptome

6. A link between RNA Metabolism and Silencing Affecting Arabidopsis Development

7. Highly Integrated Single-Base Resolution Maps of the Arabidopsis

8. An Adapter Ligation-Mediated PCT Method for high-throughput mapping of T-DNA inserts in the Arabidopsis genome.

9. Mapping the genome landscape using tiling array technology.

10. Genome-Wide High-Resolution Mapping and Functional Analysis of DNA Methylation in Arabidopsis

11. Genetic Technologies to Enable Genome-wide Phenomic Screens in Arabidopsis

12. Applications of DNA Tiling Arrays for Whole-Genome Analysis

13. Plant Genomics: The Third Wave

14. Kayoko Yamada, Jun Lim, Joseph M. Dale, Huaming Chen, Paul Shinn, Curtis J. Palm, Audrey M. Southwick, Hank C. Wu, Christopher Kim, Michelle Nguyen, Paul Pham, Rosa Cheuk, George Karlin-Newmann, Shirley X. Liu, Bao Lam, Hitomi Sakano, Troy Wu, Guixia Yu, Molly Miranda, Hong L. Quach, Matthew Tripp, Charlie H. Chang, Jeong M. Lee, Mitsue Toriumi, Marie M. H. Chan, Carolyn C. Tang, Courtney S. Onodera, Justine M. Deng, Kenji Akiyama, Yasser Ansari, Takahiro Arakawa, Jenny Banh, Fumika Banno, Leah Bowser, Shelise Brooks, Piero Carninci, Qimin Chao, Nathan Choy, Akiko Enju, Andrew D. Goldsmith, Mani Gurjal, Nancy F. Hansen, Yoshihide Hayashizaki, Chanda Johnson-Hopson, Vickie W. Hsuan, Kei Iida, Meagan Karnes, Shehnaz Khan, Eric Koesema, Junko Ishida, Paul X. Jiang, Ted Jones, Jun Kawai, Asako Kamiya, Cristina Meyers, Maiko Nakajima, Mari Narusaka, Motoaki Seki, Tetsuya Sakurai, Masakazu Satou, Racquel Tamse, Maria Vaysberg, Erika K. Wallender, Cecilia Wong, Yuki Yamamura, Shiaulou Yuan, Kazuo Shinozaki, Ronald W. Davis, Athanasios Theologis, and Joseph R. Ecker (2003) Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome Science 302: 842-846.

15. José M. Alonso, Anna N. Stepanova, Thomas J. Leisse, Christopher J. Kim, Huaming Chen, Paul Shinn, Denise K. Stevenson, Justin Zimmerman, Pascual Barajas, Rosa Cheuk, Carmelita Gadrinab, Collen Heller, Albert Jeske, Eric Koesema, Cristina C. Meyers, Holly Parker, Lance Prednis, Yasser Ansari, Nathan Choy, Hashim Deen, Michael Geralt, Nisha Hazari, Emily Hom, Meagan Karnes, Celene Mulholland, Ral Ndubaku, Ian Schmidt, Plinio Guzman, Laura Aguilar-Henonin, Markus Schmid, Detlef Weigel, David E. Carter, Trudy Marchand, Eddy Risseeuw, Debra Brogden, Albana Zeko, William L. Crosby, Charles C. Berry, and Joseph R. Ecker (2003) Genome-Wide Insertional Mutagenesis of Arabidopsis thaliana Science 301: 653-657.