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SIGnAL T-DNA/MicroArray Search Engines (Plain Text)

      1. Multiple-gene search:

      This program allows users input more than 1 gene, and it returns all T-DNA insertions or cDNA clones that genes hit.


          Please input gene names here (At?gxxxxx only):

          




            
           

      2. Search for the new Affymetrix Arabidopsis chip (affyName or AtName):

      This program allows users input multiple affynames or genes, and it returns all T-DNA insertions or cDNA clones that genes hit.

      Note: Some probe sets, for example, 259447_s_at, 255882_x_at etc., of the new Affymetrix Arabidopsis chip will cross-hybridize with othe gene or genes, which could be found in the first part of the search return with keyword "CROSS_HYBS". Please identify actually expressed gene first and then search its T-DNA insertions.


          Please input gene names or affy names here (At?gxxxxx or 12345_at):

          




            
           


      3. Search by Affymetrix list for old chip (for example - "19866_at")

      It returns T-DNA insertions or cDNAs.


          Please input here:

          




            
           


      4. Search by TAIR GO terms (for example - "protein kinase").

      It returns two parts. Part I -- Gene and GO number; Part II -- then T-DNA insertions or cDNAs.


          Please input here:

          




            
           


      5. Blast with return of T-DNAs or cDNAs:

      While you submit your sequence or sequences, this program does blast search the Arabidopsis genomic sequences first, then searches insetion database, and finally returns T-DNA insertions or cDNA clones. It takes a little bit longer time than usual.
      NOTE: please include ">sequence_name" (fasta formate) in your submission to seperate sequences.

      Program: E-value: Hits:
      Cut and paste your sequence into here

      File :    


      6. GeneChip (for AtGenome1 only) and Gene Search

      Affymetrix name: for example: 15020_at

      Gene name: for example: At1g01010, T25K16_1

      or Function: for example: auxin

               


      Convert Affymetrix list (AtGenome1 only) to gene (atg) names

          Please input Affymetrix list here ( < 1000 ):

          




            
           


      Convert gene name to Affymetrix list (AtGenome1 only)

          Please input gene list here ( < 1000 ):

          




            
           




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