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Nature Milestones | 9 February 2021
Milestones in Genomic Sequencing

2000 Arabidopsis thaliana genome
2008 Transcriptomes - a new layer of complexity
2009 Mapping the methylome
2012 Our most elemental encyclopaedia
2015 Epigenome: The symphony in your cells

Plant

My Favourite Site

SIGnAL T-DNA Express

Salk Insertion
Sequence Database

Salk Homozygote
T-DNA Collection

Arabidopsis Tiling
Array Transcriptome

Arabidopsis Gene
ORFeome Collection

Arabidopsis GMUCT Uncapped
& Cleaved Transcripts

EIN3 -Ethylene Chip-seq
/RNA-seq browser

High Resolution
Arabidopsis Exosome

Arabidopsis Cyclome

Arabidopsis 1,001 Genomes,
Epigenomes, transcriptomes
& Physical Maps

Salk Arabidopsis
1,001 Genomes

Complex architecture and epigenomics of plant T-DNA insertions

Perlegen Arabidopsis
Resequencing

Single Feature
Polymorphism Database

High Resolution
Arabidopsis Methylome

Transgenerational Inheritance
of Methylation Variants

Single-base Resolution
Epigenome Maps

Arabidopsis Biotic
Stress Epigenome

Plant Cistrome /Epicistrome Atlas

Arabidopsis Root
Cell-type Methylomes

Arabidopsis Seed Methylomes

B-ARR-mediated cytokinin
transcriptional network

Epigenetic Control of
Ethylene Signaling

Arabidopsis
Interactome (AI-1)

Abscisic Acid TF Network

Arabidopsis thaliana TF
interaction network (AtTFIN-1)

Jasmonic Acid Signaling Networks

Phytochrome-Interacting Factors trigger chromatin dynamics in plants

Rice Functional
Genomics Database

Soybean Epigenome Browser

Integration of Omic Networks
in Maize Atlas

Human

Human DNA Methylomes

Human Pluripotent
Cell Methylomes

Human/Mouse
Brain Methylomes

Human Nuclear Transfer
ES Cell Methylomes

Human Tissue Epigenomes

Human and Mouse Single Cortial Neuron Methylomes

Epigenomic Analysis of Multilineage Differentiation of Human Embryonic Stem Cells

Single Nucleus 3D Chromatin Structure and Methylomes from Human Cortex

Single nucleus multi-omics of human cortical cell genomes

Single Cell DNA Methylation and 3D Genome Architecture in the Human Brain

Mouse

Circadian Epigenome

Epigenomic Signatures
of Neuronal Diversity

Mouse Retinal
Cell Epigenomes

Endothelial Cell Epigenomes

Induced Neuron (iN) Epigenomes

Dnmt3a dependent methylation in inhibitory neurons

Spatiotemporal DNA methylome dynamics of the developing mouse fetus

Single Nucleus Pituitary Methylomes

OMB: Brain Cell Methylation Viewer

Mouse Brain Methylome Atlas

Mouse Brain EpiRetro-seq Atlas

Salk Institute Genomic Analysis Laboratory
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Last modified : Jun. 18, 2024