CLON GATCGAAACAGAGAAAC[About MPSS mRNA] 
TYPE MPSS mRNA Target
CHRO chr4
EVAL 100.00
COOR W/13048442-13048458
NOTE 0 0 0 0 0 33 35 2 25 55 55 0 0 0 0 78 45

HITS At4g25540[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25540.1 CDS gene_syn ATMSH3, M7J2.90, M7J2_90, MSH3, homolog of DNA mismatch repair protein MSH3 gene MSH3 function encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G). go_process mismatch repair|GO:0006298|10852942|ISS go_function damaged DNA binding|GO:0003684|10852942|IDA go_function protein binding|GO:0005515|10852942|IPI go_function mismatched DNA binding|GO:0030983|10852942|IDA product homolog of DNA mismatch repair protein MSH3 note homolog of DNA mismatch repair protein MSH3 (MSH3); CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695); BEST Arabidopsis thaliana protein match is: MUTS homolog 6 (TAIR:AT4G02070.2); Has 14547 Blast hits to 13713 proteins in 2703 species: Archae - 153; Bacteria - 9793; Metazoa - 705; Fungi - 864; Plants - 451; Viruses - 3; Other Eukaryotes - 2578 (source: NCBI BLink). protein_id AT4G25540.1p transcript_id AT4G25540.1 protein_id AT4G25540.1p transcript_id AT4G25540.1 LOCN 1000-Promotor COOR C/13042700-13042969,13043133-13043594,13043679-13043828,13043921-13043992,13044082-13044342,13044680-13044811,13044972-13045226,13045722-13045973,13046216-13046314,13046403-13046567,13046731-13046922,13047180-13048115 HITS At4g25550[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25550.1 CDS gene_syn M7J2.80, M7J2_80 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function protein binding|GO:0005515|16282318|IPI product Cleavage/polyadenylation specificity factor, 25kDa subunit note Cleavage/polyadenylation specificity factor, 25kDa subunit; CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, 25kDa subunit (InterPro:IPR016706); BEST Arabidopsis thaliana protein match is: homolog of CFIM-25 (TAIR:AT4G29820.1); Has 397 Blast hits to 397 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 88; Plants - 70; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). protein_id AT4G25550.1p transcript_id AT4G25550.1 protein_id AT4G25550.1p transcript_id AT4G25550.1 LOCN 300-UTR5 COOR W/13048519-13048637,13049147-13049192,13049850-13049943,13050035-13050108,13050438-13050524,13050608-13050718,13050802-13050873