CODE At4g25550 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr4 TITL AT4G25550.1 CDS gene_syn M7J2.80, M7J2_80 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function protein binding|GO:0005515|16282318|IPI product Cleavage/polyadenylation specificity factor, 25kDa subunit note Cleavage/polyadenylation specificity factor, 25kDa subunit; CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, 25kDa subunit (InterPro:IPR016706); BEST Arabidopsis thaliana protein match is: homolog of CFIM-25 (TAIR:AT4G29820.1); Has 397 Blast hits to 397 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 88; Plants - 70; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). protein_id AT4G25550.1p transcript_id AT4G25550.1 protein_id AT4G25550.1p transcript_id AT4G25550.1 COOR W/13048519-13048637,13049147-13049192,13049850-13049943,13050035-13050108,13050438-13050524,13050608-13050718,13050802-13050873 HITS AU236554 [GenBank] TYPE ESTs EVAL e-144 LOCN Exon COOR W/13048377-13048637,13049147-13049191,13049849-13049943,13050035-13050107,13050437-13050525,13050609-13050642 NOTE BP857292 BP832195 DR285107 BP563032 DR285108 BP809943 BP858876 DR285106 BP840356 EL281985 BP865693 BP865694 AV554529 ES171327 DR285109 EH866400 EL127922 BP569597 ES058043 BP573357 EL213178 BP577016 ES176364 EH887655 ES056518 EH955713 ES142548 EL073330 EL108185 EL315755 HITS RAFL14-95-A13 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 98.33 LOCN Exon COOR W/13048377-13048637,13049147-13049473 HITS RAFL15-08-C23 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.14 LOCN Exon COOR W/13048377-13048637,13049147-13049192,13049850-13049943,13050035-13050108,13050438-13050524,13050608-13050718,13050802-13051170 HITS RAFL19-31-N23 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.49 LOCN Exon COOR W/13048381-13048637,13049147-13049192,13049850-13049943,13050035-13050108,13050438-13050524,13050608-13050718,13050802-13051099 HITS GATCGCTTCTCTCCCCG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR5 COOR W/13048396-13048412 NOTE 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 HITS GATCGAAACAGAGAAAC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR5 COOR W/13048442-13048458 NOTE 0 0 0 0 0 33 35 2 25 55 55 0 0 0 0 78 45 HITS U50693 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP pUni Clone EVAL 100.00 LOCN Exon COOR W/13048519-13048637,13049147-13049192,13049850-13049943,13050035-13050108,13050438-13050524,13050608-13050718,13050802-13050904 NOTE BT005519 HITS G50693 Invitrogen/Salk Gateway clone, originally SSP/Salk pUNI clone. [pENTR223 Seq] [pENTR223 Map] [Orignal SSP/SALK U] [Order from ABRC] TYPE GateWay Clone EVAL 100.00 LOCN Exon COOR W/13048519-13048637,13049147-13049192,13049850-13049943,13050035-13050108,13050438-13050524,13050608-13050718,13050802-13050904 NOTE U50693 BT005519 pENTR_Sfi HITS 245235_at [gAtlas] TYPE Affy Probes EVAL 6e-57 LOCN Exon COOR W/13049147-13049191,13049849-13049960,13050007-13050107,13050437-13050543,13050609-13050642 HITS CATGAGGACTAGCG [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/13049162-13049175 HITS GATCTGCTCTACTTGTT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Intron COOR W/13049207-13049223 NOTE 10 0 4 0 0 0 0 0 3 0 0 0 0 0 0 0 0 HITS GATCTGTGTGATATTTT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Intron COOR W/13049432-13049448 NOTE 7 35 9 30 7 0 0 3 0 0 2 0 0 0 0 0 0 HITS BX835051 [GenBank] TYPE ESTs EVAL 1e-77 LOCN Exon COOR C/13050033-13050111,13050441-13050525,13050610-13050715,13050799-13050973 HITS BX835051 [GenBank] [Order] TYPE GSLT cDNA EVAL 1e-77 LOCN Exon COOR C/13050033-13050107,13050437-13050525,13050610-13050715,13050799-13050973 HITS AV537408 [GenBank] TYPE ESTs EVAL e-116 LOCN Exon COOR C/13050034-13050107,13050437-13050522,13050606-13050715,13050798-13051030 NOTE EL093056 ES033143 HITS BX828932 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR W/13050034-13050107,13050437-13050522,13050606-13050716,13050799-13051147 HITS DR378290 [GenBank] TYPE ESTs EVAL e-169 LOCN Exon COOR W/13050455-13050523,13050606-13050715,13050799-13051099 HITS AV535333 [GenBank] TYPE ESTs EVAL e-149 LOCN Exon COOR C/13050606-13050717,13050804-13051102 NOTE BP671895 BP588371 HITS BP624072 [GenBank] TYPE ESTs EVAL e-160 LOCN Exon COOR C/13050612-13050714,13050799-13051116 NOTE EL147702 AU230175 EL267668 BP671131 HITS BP620607 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/13050645-13050715,13050799-13051147 HITS BP587153 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/13050656-13050715,13050799-13051158 HITS BP587988 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/13050669-13050715,13050799-13051169 NOTE BP589805 ES140086 AU227505 ES042785 ES018480 EL220813 EL218921 ES095648 AV521345 HITS RAFL15-08-C23 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL 0.0 LOCN Exon COOR W/13050799-13051169 HITS CATGATTAGTTCGT [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/13050858-13050871 HITS CATGTGTTTCATTC [About SAGE] TYPE SAGE Target EVAL 100 LOCN 300-UTR3 COOR W/13051127-13051140