CODE At4g25540 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr4 TITL AT4G25540.1 CDS gene_syn ATMSH3, M7J2.90, M7J2_90, MSH3, homolog of DNA mismatch repair protein MSH3 gene MSH3 function encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G). go_process mismatch repair|GO:0006298|10852942|ISS go_function damaged DNA binding|GO:0003684|10852942|IDA go_function protein binding|GO:0005515|10852942|IPI go_function mismatched DNA binding|GO:0030983|10852942|IDA product homolog of DNA mismatch repair protein MSH3 note homolog of DNA mismatch repair protein MSH3 (MSH3); CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695); BEST Arabidopsis thaliana protein match is: MUTS homolog 6 (TAIR:AT4G02070.2); Has 14547 Blast hits to 13713 proteins in 2703 species: Archae - 153; Bacteria - 9793; Metazoa - 705; Fungi - 864; Plants - 451; Viruses - 3; Other Eukaryotes - 2578 (source: NCBI BLink). protein_id AT4G25540.1p transcript_id AT4G25540.1 protein_id AT4G25540.1p transcript_id AT4G25540.1 COOR C/13042700-13042969,13043133-13043594,13043679-13043828,13043921-13043992,13044082-13044342,13044680-13044811,13044972-13045226,13045722-13045973,13046216-13046314,13046403-13046567,13046731-13046922,13047180-13048115 HITS AJ007791 [GenBank] TYPE Community cDNA EVAL 99.03 LOCN Exon COOR C/13042557-13042969,13043133-13043594,13043679-13043828,13043921-13043992,13044082-13044342,13044680-13044811,13044972-13045226,13045722-13045973,13046216-13046314,13046403-13046567,13046731-13046922,13047180-13048213 HITS RAFL22-65-J17 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.23 LOCN Exon COOR C/13042563-13042969,13043133-13043594,13043679-13043828,13043921-13043992,13044082-13044288 HITS BP643959 [GenBank] TYPE ESTs EVAL e-130 LOCN Exon COOR W/13042564-13042932 HITS GATCATCTGTTAGTTGC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR C/13042649-13042665 NOTE 1 2 0 8 0 3 0 0 0 0 0 0 0 0 0 25 0 HITS CATGCTTTAAAAAC [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/13042750-13042763 HITS 245236_at [gAtlas] TYPE Affy Probes EVAL e-159 LOCN Exon COOR C/13042785-13042969,13043133-13043415 HITS CATGAAGAACCGAG [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR C/13042854-13042867 HITS BP823572 [GenBank] TYPE ESTs EVAL 2e-96 LOCN Exon COOR C/13043729-13043828,13043920-13043991,13044081-13044287 HITS CATGTTAGGTCCGG [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/13043733-13043746 HITS AU236554 [GenBank] TYPE ESTs EVAL e-144 LOCN 300-UTR5 COOR W/13048377-13048637,13049147-13049191,13049849-13049943,13050035-13050107,13050437-13050525,13050609-13050642 NOTE BP857292 BP832195 DR285107 BP563032 DR285108 BP809943 BP858876 DR285106 BP840356 EL281985 BP865693 BP865694 AV554529 ES171327 DR285109 EH866400 EL127922 BP569597 ES058043 BP573357 EL213178 BP577016 ES176364 EH887655 ES056518 EH955713 ES142548 EL073330 EL108185 EL315755 HITS RAFL14-95-A13 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 98.33 LOCN 300-UTR5 COOR W/13048377-13048637,13049147-13049473 HITS RAFL15-08-C23 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.14 LOCN 300-UTR5 COOR W/13048377-13048637,13049147-13049192,13049850-13049943,13050035-13050108,13050438-13050524,13050608-13050718,13050802-13051170 HITS RAFL19-31-N23 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.49 LOCN 300-UTR5 COOR W/13048381-13048637,13049147-13049192,13049850-13049943,13050035-13050108,13050438-13050524,13050608-13050718,13050802-13051099 HITS GATCGCTTCTCTCCCCG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR5 COOR W/13048396-13048412 NOTE 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 HITS GATCGAAACAGAGAAAC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 1000-Promotor COOR W/13048442-13048458 NOTE 0 0 0 0 0 33 35 2 25 55 55 0 0 0 0 78 45 HITS U50693 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP pUni Clone EVAL 100.00 LOCN 1000-Promotor COOR W/13048519-13048637,13049147-13049192,13049850-13049943,13050035-13050108,13050438-13050524,13050608-13050718,13050802-13050904 NOTE BT005519 HITS G50693 Invitrogen/Salk Gateway clone, originally SSP/Salk pUNI clone. [pENTR223 Seq] [pENTR223 Map] [Orignal SSP/SALK U] [Order from ABRC] TYPE GateWay Clone EVAL 100.00 LOCN 1000-Promotor COOR W/13048519-13048637,13049147-13049192,13049850-13049943,13050035-13050108,13050438-13050524,13050608-13050718,13050802-13050904 NOTE U50693 BT005519 pENTR_Sfi