CLON JAtY68O03[About JAtY] 
TYPE JAtY TAC
CHRO chr4
EVAL 0.0
COOR W/12963825-13058205

HITS At4g25350[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25350.1 CDS gene_syn SHB1, SHORT HYPOCOTYL UNDER BLUE1, T30C3.10, T30C3_10 gene SHB1 function SHB1 encodes a nuclear and cytosolic protein that has motifs homologous with SYG1 protein family members. Acts in cryptochrome signaling. Overexpression of SHB1 enhanced the expression of PHYTOCHROME-INTERACTING FACTOR4 (PIF4) under red light and promoted proteasome-mediated degradation of phytochrome A and hypocotyl elongation under far-red light. A knockout allele suppressed LONG HYPOCOTYL IN FAR-RED LIGHT1 (HFR1) expression and showed several deetiolation phenotypes. Acts upstream of HFR1. Regulates seed development. go_component nucleus|GO:0005634|16500988|IDA go_component cytosol|GO:0005829|16500988|IDA go_component integral to membrane|GO:0016021||ISS go_process endosperm development|GO:0009960|19141706|IMP go_process red or far-red light signaling pathway|GO:0010017|16500988|IMP go_process regulation of gene expression|GO:0010468|19141706|IMP go_process positive regulation of cell size|GO:0045793|19141706|IMP go_process regulation of seed development|GO:0080050|19141706|IMP go_process regulation of seed growth|GO:0080113|19141706|IMP go_function molecular_function|GO:0003674||ND product EXS (ERD1/XPR1/SYG1) family protein note SHORT HYPOCOTYL UNDER BLUE1 (SHB1); CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: EXS (ERD1/XPR1/SYG1) family protein (TAIR:AT1G35350.1); Has 1169 Blast hits to 1111 proteins in 205 species: Archae - 2; Bacteria - 6; Metazoa - 265; Fungi - 425; Plants - 309; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink). protein_id AT4G25350.1p transcript_id AT4G25350.1 protein_id AT4G25350.1p transcript_id AT4G25350.1 LOCN Exon COOR C/12963382-12963484,12963562-12963698,12963789-12964220,12964301-12964345,12964425-12964529,12964621-12964879,12964964-12965084,12965175-12965304,12965375-12965446,12965525-12965811,12965902-12966448 HITS At4g25360[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25360.1 CDS gene_syn T30C3.30, T30C3_30, TBL18, TRICHOME BIREFRINGENCE-LIKE 18 gene TBL18 function Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). go_process biological_process|GO:0008150||ND product TRICHOME BIREFRINGENCE-LIKE 18 note TRICHOME BIREFRINGENCE-LIKE 18 (TBL18); INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G51640.1); Has 1342 Blast hits to 1320 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1339; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_id AT4G25360.1p transcript_id AT4G25360.1 protein_id AT4G25360.1p transcript_id AT4G25360.1 LOCN Exon COOR W/12970187-12970706,12971214-12971488,12971598-12972404 HITS At4g25360[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25360.2 CDS gene_syn T30C3.30, T30C3_30, TBL18, TRICHOME BIREFRINGENCE-LIKE 18 gene TBL18 function Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). go_process biological_process|GO:0008150||ND product TRICHOME BIREFRINGENCE-LIKE 18 note TRICHOME BIREFRINGENCE-LIKE 18; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G51640.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT4G25360.2p transcript_id AT4G25360.2 protein_id AT4G25360.2p transcript_id AT4G25360.2 LOCN Exon COOR W/12970187-12970706,12971214-12971488,12971598-12972404 HITS At4g25370[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25370.1 CDS gene_syn T30C3.40, T30C3_40 go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component plastid stroma|GO:0009532|14593120|IDA go_component chloroplast stroma|GO:0009570|16207701|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component thylakoid|GO:0009579|11826309|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process protein metabolic process|GO:0019538||IEA go_function ATP binding|GO:0005524||ISS product Double Clp-N motif protein note Double Clp-N motif protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: thylakoid, plastid stroma, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Double Clp-N motif protein (TAIR:AT4G12060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25370.1p transcript_id AT4G25370.1 protein_id AT4G25370.1p transcript_id AT4G25370.1 LOCN Exon COOR W/12972747-12972964,12973068-12973103,12973197-12973306,12974056-12974235,12974329-12974456,12974536-12974580 HITS At4g25380[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25380.1 CDS gene_syn SAP10, T30C3.50, T30C3_50, stress-associated protein 10 gene SAP10 go_function DNA binding|GO:0003677||IEA go_function zinc ion binding|GO:0008270||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product stress-associated protein 10 note stress-associated protein 10 (SAP10); FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT4G22820.2); Has 1084 Blast hits to 1007 proteins in 145 species: Archae - 2; Bacteria - 0; Metazoa - 503; Fungi - 9; Plants - 445; Viruses - 6; Other Eukaryotes - 119 (source: NCBI BLink). protein_id AT4G25380.1p transcript_id AT4G25380.1 protein_id AT4G25380.1p transcript_id AT4G25380.1 LOCN Exon COOR C/12975936-12976328 HITS At4g25386[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25386.1 CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25386.1p transcript_id AT4G25386.1 protein_id AT4G25386.1p transcript_id AT4G25386.1 LOCN Exon COOR C/12977004-12977138 HITS At4g25390[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25390.1 CDS gene_syn T30C3.60, T30C3_60 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G51770.1); Has 91751 Blast hits to 74768 proteins in 2369 species: Archae - 62; Bacteria - 7643; Metazoa - 25610; Fungi - 5037; Plants - 44627; Viruses - 173; Other Eukaryotes - 8599 (source: NCBI BLink). protein_id AT4G25390.1p transcript_id AT4G25390.1 protein_id AT4G25390.1p transcript_id AT4G25390.1 LOCN Exon COOR W/12977491-12979446 HITS At4g25390[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25390.2 CDS gene_syn T30C3.60, T30C3_60 go_component plasma membrane|GO:0005886|17317660|IDA go_process protein amino acid phosphorylation|GO:0006468||IEA go_function protein kinase activity|GO:0004672||IEA go_function protein serine/threonine kinase activity|GO:0004674||IEA go_function ATP binding|GO:0005524||IEA go_function kinase activity|GO:0016301||ISS product Protein kinase superfamily protein note Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G51770.1); Has 74320 Blast hits to 73880 proteins in 2363 species: Archae - 62; Bacteria - 7606; Metazoa - 25322; Fungi - 4973; Plants - 27643; Viruses - 173; Other Eukaryotes - 8541 (source: NCBI BLink). protein_id AT4G25390.2p transcript_id AT4G25390.2 protein_id AT4G25390.2p transcript_id AT4G25390.2 LOCN Exon COOR W/12977491-12978883,12979346-12979446 HITS At4g25400[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25400.1 CDS gene_syn T30C3.70, T30C3_70 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G51780.1); Has 180 Blast hits to 180 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT4G25400.1p transcript_id AT4G25400.1 protein_id AT4G25400.1p transcript_id AT4G25400.1 LOCN Exon COOR W/12981295-12981396,12981588-12981914,12982273-12982335 HITS At4g25410[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25410.1 CDS gene_syn T30C3.80, T30C3_80 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G51790.1); Has 313 Blast hits to 313 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 8; Plants - 300; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT4G25410.1p transcript_id AT4G25410.1 protein_id AT4G25410.1p transcript_id AT4G25410.1 LOCN Exon COOR W/12985772-12985996,12986159-12986518,12986603-12986676,12987116-12987149 HITS At4g25420[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25420.1 CDS gene_syn ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, AT2301, ATGA20OX1, GA REQUIRING 5, GA20OX1, GA5, GIBBERELLIN 20-OXIDASE, T30C3.90, T30C3_90 gene GA20OX1 function Encodes gibberellin 20-oxidase that is involved in the later steps of the gibberellin biosynthetic pathway. Regulated by a circadian clock. Weak expression response to far red light. go_component cytoplasm|GO:0005737|10330476|TAS go_process circadian rhythm|GO:0007623|15923331|IEP go_process gibberellin biosynthetic process|GO:0009686|15923331|TAS go_process gibberellin biosynthetic process|GO:0009686|7630935|IDA go_process response to gibberellin stimulus|GO:0009739|7604047|IEP go_process gibberellic acid mediated signaling pathway|GO:0009740|10330476|TAS go_process unidimensional cell growth|GO:0009826|18069939|IGI go_process flower development|GO:0009908|18069939|IGI go_process leaf development|GO:0048366|20460583|IMP go_process short-day photoperiodism, flowering|GO:0048575|7604047|IEP go_function gibberellin 20-oxidase activity|GO:0045544|10330476|TAS go_function gibberellin 20-oxidase activity|GO:0045544|15923331|TAS go_function gibberellin 20-oxidase activity|GO:0045544|7604047|IDA go_function gibberellin 20-oxidase activity|GO:0045544|7630935|IDA product 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein note GA20OX1; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: gibberellin 20 oxidase 2 (TAIR:AT5G51810.1); Has 8544 Blast hits to 8501 proteins in 990 species: Archae - 0; Bacteria - 1084; Metazoa - 124; Fungi - 981; Plants - 4942; Viruses - 0; Other Eukaryotes - 1413 (source: NCBI BLink). protein_id AT4G25420.1p transcript_id AT4G25420.1 protein_id AT4G25420.1p transcript_id AT4G25420.1 LOCN Exon COOR C/12990982-12991242,12991346-12991667,12991859-12992409 HITS At4g25430[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25430.1 CDS gene_syn T30C3.7 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25430.1p transcript_id AT4G25430.1 protein_id AT4G25430.1p transcript_id AT4G25430.1 LOCN Exon COOR W/12998571-12998757,12998850-12998941,12999018-12999800,12999894-13000211 HITS At4g25433[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25433.1 CDS go_component endomembrane system|GO:0012505||IEA go_process cell wall macromolecule catabolic process|GO:0016998||IEA go_process cell wall macromolecule catabolic process|GO:0016998||ISS go_function molecular_function|GO:0003674||ND product peptidoglycan-binding LysM domain-containing protein note peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392); BEST Arabidopsis thaliana protein match is: peptidoglycan-binding LysM domain-containing protein (TAIR:AT5G62150.1); Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT4G25433.1p transcript_id AT4G25433.1 protein_id AT4G25433.1p transcript_id AT4G25433.1 LOCN Exon COOR C/13001463-13001795 HITS At4g25434[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25434.1 CDS gene_syn ATNUDT10, NUDT10, nudix hydrolase homolog 10 gene NUDT10 go_process metabolic process|GO:0008152||ISS go_function catalytic activity|GO:0003824||ISS go_function ADP-ribose diphosphatase activity|GO:0047631|15878881|IDA go_function NAD or NADH binding|GO:0051287|15878881|IDA product nudix hydrolase homolog 10 note nudix hydrolase homolog 10 (NUDT10); CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase (InterPro:IPR020476), NUDIX hydrolase, conserved site (InterPro:IPR020084), Nudix hydrolase 6-like (InterPro:IPR003293), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 2 (TAIR:AT5G47650.1); Has 1857 Blast hits to 1857 proteins in 579 species: Archae - 36; Bacteria - 1096; Metazoa - 164; Fungi - 9; Plants - 175; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink). protein_id AT4G25434.1p transcript_id AT4G25434.1 protein_id AT4G25434.1p transcript_id AT4G25434.1 LOCN Exon COOR C/13004043-13004243,13004331-13004439,13004532-13004566,13004648-13004698,13004793-13004855,13005007-13005144,13005441-13005506,13005601-13005771 HITS At4g25434[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25434.2 CDS gene_syn ATNUDT10, NUDT10, nudix hydrolase homolog 10 gene NUDT10 go_component cytosol|GO:0005829|15878881|RCA go_process metabolic process|GO:0008152||ISS go_function catalytic activity|GO:0003824||ISS go_function ADP-ribose diphosphatase activity|GO:0047631|15878881|IDA go_function NAD or NADH binding|GO:0051287|15878881|IDA product nudix hydrolase homolog 10 note nudix hydrolase homolog 10 (NUDT10); FUNCTIONS IN: ADP-ribose diphosphatase activity, NAD or NADH binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 2 (TAIR:AT5G47650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT4G25434.2p transcript_id AT4G25434.2 protein_id AT4G25434.2p transcript_id AT4G25434.2 LOCN Exon COOR C/13004043-13004243,13004331-13004439,13004532-13004698,13004793-13004855,13005007-13005144,13005441-13005506,13005601-13005771 HITS At4g25435[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25435.1 tRNA gene_syn 67154.TRNA-LYS-1, 68201.TRNA-LYS-1, AT4G25436 go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Lys (anticodon: CTT) transcript_id AT4G25435.1 LOCN Exon COOR C/13006234-13006306 HITS At4g25440[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25440.1 CDS gene_syn T30C3.6, ZFWD1, zinc finger WD40 repeat protein 1 gene ZFWD1 go_function nucleic acid binding|GO:0003676||IEA go_function zinc ion binding|GO:0008270||IEA go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product zinc finger WD40 repeat protein 1 note zinc finger WD40 repeat protein 1 (ZFWD1); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: xylem; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G51980.1); Has 28356 Blast hits to 16036 proteins in 564 species: Archae - 44; Bacteria - 4332; Metazoa - 10522; Fungi - 6455; Plants - 3358; Viruses - 0; Other Eukaryotes - 3645 (source: NCBI BLink). protein_id AT4G25440.1p transcript_id AT4G25440.1 protein_id AT4G25440.1p transcript_id AT4G25440.1 LOCN Exon COOR C/13007107-13007251,13007334-13007431,13007522-13007581,13007669-13007788,13007908-13008054,13008254-13008355,13008491-13008580,13008751-13008846,13008947-13009381 HITS At4g25450[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25450.1 CDS gene_syn ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, AT4G25460, ATNAP8, NAP8, T30C3.5, non-intrinsic ABC protein 8 gene NAP8 function member of NAP subfamily go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12766230|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component membrane|GO:0016020|17432890|IDA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_function transporter activity|GO:0005215|11346655|ISS go_function transporter activity|GO:0005215||ISS go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS product non-intrinsic ABC protein 8 note non-intrinsic ABC protein 8 (NAP8); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1); Has 416986 Blast hits to 378266 proteins in 4104 species: Archae - 7380; Bacteria - 322963; Metazoa - 9904; Fungi - 7465; Plants - 5560; Viruses - 14; Other Eukaryotes - 63700 (source: NCBI BLink). protein_id AT4G25450.1p transcript_id AT4G25450.1 protein_id AT4G25450.1p transcript_id AT4G25450.1 LOCN Exon COOR C/13009845-13010081,13010231-13010287,13010373-13010429,13010517-13010651,13010738-13010827,13010932-13011080,13011184-13011463,13011553-13011615,13011949-13012077,13012185-13012235,13012342-13012442,13012559-13012649,13012844-13012945,13013033-13013056,13013158-13013345,13013522-13013912 HITS At4g25450[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25450.3 CDS gene_syn ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, AT4G25460, ATNAP8, NAP8, T30C3.5, non-intrinsic ABC protein 8 gene NAP8 function member of NAP subfamily go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_function transporter activity|GO:0005215|11346655|ISS go_function transporter activity|GO:0005215||ISS go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS product non-intrinsic ABC protein 8 note non-intrinsic ABC protein 8 (NAP8); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1); Has 420091 Blast hits to 380969 proteins in 4118 species: Archae - 7380; Bacteria - 326284; Metazoa - 9897; Fungi - 7311; Plants - 5559; Viruses - 14; Other Eukaryotes - 63646 (source: NCBI BLink). protein_id AT4G25450.3p transcript_id AT4G25450.3 protein_id AT4G25450.3p transcript_id AT4G25450.3 LOCN Exon COOR C/13009845-13010081,13010231-13010287,13010373-13010429,13010517-13010651,13010738-13010827,13010932-13011080,13011184-13011463,13011553-13011615,13011949-13012077,13012185-13012235,13012342-13012442,13012559-13012649,13012844-13012945,13013033-13013056,13013158-13013229 HITS At4g25450[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25450.2 CDS gene_syn ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, AT4G25460, ATNAP8, NAP8, T30C3.5, non-intrinsic ABC protein 8 gene NAP8 function member of NAP subfamily go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_function transporter activity|GO:0005215|11346655|ISS go_function transporter activity|GO:0005215||ISS go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS product non-intrinsic ABC protein 8 note non-intrinsic ABC protein 8 (NAP8); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140); BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT4G25450.2p transcript_id AT4G25450.2 protein_id AT4G25450.2p transcript_id AT4G25450.2 LOCN Exon COOR C/13010367-13010429,13010517-13010651,13010738-13010827,13010932-13011080,13011184-13011463,13011553-13011615,13011949-13012077,13012185-13012235,13012342-13012442,13012559-13012649,13012844-13012945,13013033-13013056,13013158-13013345,13013522-13013912 HITS At4g25470[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25470.1 CDS gene_syn ATCBF2, C-repeat/DRE binding factor 2, CBF2, DRE/CRT-BINDING PROTEIN, DRE/CRT-BINDING PROTEIN 1C, DREB1C, FREEZING TOLERANCE QTL 4, FTQ4, T30C3.12 gene CBF2 function Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway. go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process circadian rhythm|GO:0007623|15728337|IEP go_process response to cold|GO:0009409|16258011|IEP go_process response to cold|GO:0009409|9735350|TAS go_process response to cold|GO:0009409|9952441|IEP go_process cold acclimation|GO:0009631|15356394|IMP go_process response to abscisic acid stimulus|GO:0009737|15247382|IEP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function transcription activator activity|GO:0016563|9707537|TAS go_function transcription activator activity|GO:0016563|9952441|ISS product C-repeat/DRE binding factor 2 note C-repeat/DRE binding factor 2 (CBF2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: C-repeat/DRE binding factor 1 (TAIR:AT4G25490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25470.1p transcript_id AT4G25470.1 protein_id AT4G25470.1p transcript_id AT4G25470.1 LOCN Exon COOR C/13015436-13016086 HITS At4g25480[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25480.1 CDS gene_syn ATCBF3, C-REPEAT BINDING FACTOR 3, CBF3, DREB1A, T30C3.3, TRANSCRIPTIONAL ACTIVATOR CBF3, dehydration response element B1A gene DREB1A function encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid. go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process circadian rhythm|GO:0007623|15728337|IEP go_process response to cold|GO:0009409|10096298|IMP go_process response to cold|GO:0009409|12164808|IDA go_process response to cold|GO:0009409|16258011|IEP go_process response to cold|GO:0009409|9735350|TAS go_process response to water deprivation|GO:0009414|11158529|IDA go_process response to water deprivation|GO:0009414|16617101|IMP go_process cold acclimation|GO:0009631|18093929|IMP go_process response to abscisic acid stimulus|GO:0009737|15247382|IEP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11158529|IDA go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function transcription activator activity|GO:0016563|9707537|TAS product dehydration response element B1A note dehydration response element B1A (DREB1A); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: C-repeat/DRE binding factor 2 (TAIR:AT4G25470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25480.1p transcript_id AT4G25480.1 protein_id AT4G25480.1p transcript_id AT4G25480.1 LOCN Exon COOR C/13018353-13019003 HITS At4g25490[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25490.1 CDS gene_syn ATCBF1, C-repeat/DRE binding factor 1, CBF1, DRE BINDING PROTEIN 1B, DREB1B, T30C3.11, TRANSCRIPTIONAL ACTIVATOR CBF1 gene CBF1 function Transcriptional activator that binds to the DRE/CRT regulatory element and induces COR (cold-regulated) gene expression increasing plant freezing tolerance. It encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid. go_component nucleus|GO:0005634|9023378|IC go_process circadian rhythm|GO:0007623|15728337|IEP go_process response to cold|GO:0009409|16258011|IEP go_process response to cold|GO:0009409|9023378|IMP go_process response to cold|GO:0009409|9707537|TAS go_process response to cold|GO:0009409|9735350|TAS go_process response to water deprivation|GO:0009414|9023378|IEP go_process cold acclimation|GO:0009631|18093929|IMP go_process cold acclimation|GO:0009631|9525853|IMP go_process cold acclimation|GO:0009631|9735350|IEP go_process response to abscisic acid stimulus|GO:0009737|15247382|IEP go_function DNA binding|GO:0003677|9023378|IDA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function transcription activator activity|GO:0016563|9023378|IDA go_function transcription activator activity|GO:0016563|9023378|IGI go_function transcription activator activity|GO:0016563|9707537|TAS product C-repeat/DRE binding factor 1 note C-repeat/DRE binding factor 1 (CBF1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: C-repeat/DRE binding factor 2 (TAIR:AT4G25470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25490.1p transcript_id AT4G25490.1 protein_id AT4G25490.1p transcript_id AT4G25490.1 LOCN Exon COOR C/13021921-13022562 HITS At4g25500[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25500.1 CDS gene_syn ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ARGININE/SERINE-RICH SPLICING FACTOR, AT-SRP40, ATRSP35, ATRSP40, RSP35, SPLICING FACTOR AT-SRP40, T30C3.9, arginine/serine-rich splicing factor 35 gene RSP35 function encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component spliceosomal complex|GO:0005681|8989882|ISS go_component nuclear speck|GO:0016607|15133128|IDA go_process nuclear mRNA splicing, via spliceosome|GO:0000398|8989882|ISS go_process RNA splicing|GO:0008380|16807317|NAS go_function RNA binding|GO:0003723||ISS product arginine/serine-rich splicing factor 35 note arginine/serine-rich splicing factor 35 (RSP35); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, spliceosomal complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2); Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10; Bacteria - 734; Metazoa - 9656; Fungi - 1783; Plants - 2169; Viruses - 46; Other Eukaryotes - 1420 (source: NCBI BLink). protein_id AT4G25500.1p transcript_id AT4G25500.1 protein_id AT4G25500.1p transcript_id AT4G25500.1 LOCN Exon COOR W/13025168-13025273,13026056-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS At4g25500[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25500.4 CDS gene_syn ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ARGININE/SERINE-RICH SPLICING FACTOR, AT-SRP40, ATRSP35, ATRSP40, RSP35, SPLICING FACTOR AT-SRP40, T30C3.9, arginine/serine-rich splicing factor 35 gene RSP35 function encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component spliceosomal complex|GO:0005681|8989882|ISS go_component nuclear speck|GO:0016607|15133128|IDA go_process nuclear mRNA splicing, via spliceosome|GO:0000398|8989882|ISS go_process RNA splicing|GO:0008380|16807317|NAS go_function RNA binding|GO:0003723||ISS product arginine/serine-rich splicing factor 35 note arginine/serine-rich splicing factor 35 (RSP35); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, spliceosomal complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2). protein_id AT4G25500.4p transcript_id AT4G25500.4 protein_id AT4G25500.4p transcript_id AT4G25500.4 LOCN Exon COOR W/13025168-13025273,13026056-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS At4g25500[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25500.3 CDS gene_syn ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ARGININE/SERINE-RICH SPLICING FACTOR, AT-SRP40, ATRSP35, ATRSP40, RSP35, SPLICING FACTOR AT-SRP40, T30C3.9, arginine/serine-rich splicing factor 35 gene RSP35 function encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component spliceosomal complex|GO:0005681|8989882|ISS go_component nuclear speck|GO:0016607|15133128|IDA go_process nuclear mRNA splicing, via spliceosome|GO:0000398|8989882|ISS go_process RNA splicing|GO:0008380|16807317|NAS go_function RNA binding|GO:0003723||ISS product arginine/serine-rich splicing factor 35 note arginine/serine-rich splicing factor 35 (RSP35); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, spliceosomal complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.4); Has 12133 Blast hits to 9335 proteins in 376 species: Archae - 0; Bacteria - 104; Metazoa - 8049; Fungi - 1339; Plants - 1578; Viruses - 48; Other Eukaryotes - 1015 (source: NCBI BLink). protein_id AT4G25500.3p transcript_id AT4G25500.3 protein_id AT4G25500.3p transcript_id AT4G25500.3 LOCN Exon COOR W/13025850-13025856,13026056-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS At4g25500[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25500.2 CDS gene_syn ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ARGININE/SERINE-RICH SPLICING FACTOR, AT-SRP40, ATRSP35, ATRSP40, RSP35, SPLICING FACTOR AT-SRP40, T30C3.9, arginine/serine-rich splicing factor 35 gene RSP35 function encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component spliceosomal complex|GO:0005681|8989882|ISS go_component nuclear speck|GO:0016607|15133128|IDA go_process nuclear mRNA splicing, via spliceosome|GO:0000398|8989882|ISS go_process RNA splicing|GO:0008380|16807317|NAS go_function RNA binding|GO:0003723||ISS product arginine/serine-rich splicing factor 35 note arginine/serine-rich splicing factor 35 (RSP35); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, spliceosomal complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT4G25500.2p transcript_id AT4G25500.2 protein_id AT4G25500.2p transcript_id AT4G25500.2 LOCN Exon COOR W/13026073-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS At4g25510[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25510.1 CDS gene_syn T30C3.8 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT4G25510.1p transcript_id AT4G25510.1 protein_id AT4G25510.1p transcript_id AT4G25510.1 LOCN Exon COOR C/13027443-13027503,13027648-13028036 HITS At4g25515[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25515.1 CDS gene_syn SEUSS-like 3, SLK3 gene SLK3 go_function transcription regulator activity|GO:0030528||ISS product SEUSS-like 3 note SEUSS-like 3 (SLK3); BEST Arabidopsis thaliana protein match is: SEUSS-like 1 (TAIR:AT4G25520.1); Has 4377 Blast hits to 3114 proteins in 231 species: Archae - 0; Bacteria - 84; Metazoa - 736; Fungi - 339; Plants - 190; Viruses - 30; Other Eukaryotes - 2998 (source: NCBI BLink). protein_id AT4G25515.1p transcript_id AT4G25515.1 protein_id AT4G25515.1p transcript_id AT4G25515.1 LOCN Exon COOR W/13028219-13028749,13028832-13028963,13029129-13029177,13029352-13029566,13029701-13029769,13030031-13030131,13030266-13030359,13030445-13030514,13030667-13031463 HITS At4g25520[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25520.1 CDS gene_syn M7J2.110, M7J2_110, SEUSS-like 1, SLK1 gene SLK1 go_process embryo development|GO:0009790|20007451|IMP go_process gynoecium development|GO:0048467|20007451|IMP go_process ovule development|GO:0048481|20007451|IMP go_function transcription regulator activity|GO:0030528||ISS product SEUSS-like 1 note SEUSS-like 1 (SLK1); BEST Arabidopsis thaliana protein match is: SEUSS-like 3 (TAIR:AT4G25515.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25520.1p transcript_id AT4G25520.1 protein_id AT4G25520.1p transcript_id AT4G25520.1 LOCN Exon COOR C/13032450-13033351,13033522-13033591,13033674-13033767,13033860-13033960,13034222-13034290,13034392-13034606,13034767-13034815,13034981-13035112,13035189-13035803 HITS At4g25530[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25530.1 CDS gene_syn FLOWERING WAGENINGEN, FWA, HDG6, HOMEODOMAIN GLABROUS 6, M7J2.100, M7J2_100 gene FWA function Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation. go_component nucleus|GO:0005634|14631047|IDA go_component nucleus|GO:0005634||ISS go_process regulation of gene expression by genetic imprinting|GO:0006349|16648367|IEP go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process positive regulation of flower development|GO:0009911|9401118|IMP go_process gene silencing by RNA|GO:0031047|17105345|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function protein binding|GO:0005515|17189287|IPI go_function protein homodimerization activity|GO:0042803|17189287|IPI product FLOWERING WAGENINGEN note FLOWERING WAGENINGEN (FWA); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 7 (TAIR:AT5G52170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25530.1p transcript_id AT4G25530.1 protein_id AT4G25530.1p transcript_id AT4G25530.1 LOCN Exon COOR W/13039312-13039481,13039603-13039720,13039917-13040501,13040589-13040690,13040785-13040988,13041160-13041331,13041445-13041812,13041901-13042242 HITS At4g25540[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25540.1 CDS gene_syn ATMSH3, M7J2.90, M7J2_90, MSH3, homolog of DNA mismatch repair protein MSH3 gene MSH3 function encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G). go_process mismatch repair|GO:0006298|10852942|ISS go_function damaged DNA binding|GO:0003684|10852942|IDA go_function protein binding|GO:0005515|10852942|IPI go_function mismatched DNA binding|GO:0030983|10852942|IDA product homolog of DNA mismatch repair protein MSH3 note homolog of DNA mismatch repair protein MSH3 (MSH3); CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695); BEST Arabidopsis thaliana protein match is: MUTS homolog 6 (TAIR:AT4G02070.2); Has 14547 Blast hits to 13713 proteins in 2703 species: Archae - 153; Bacteria - 9793; Metazoa - 705; Fungi - 864; Plants - 451; Viruses - 3; Other Eukaryotes - 2578 (source: NCBI BLink). protein_id AT4G25540.1p transcript_id AT4G25540.1 protein_id AT4G25540.1p transcript_id AT4G25540.1 LOCN Exon COOR C/13042700-13042969,13043133-13043594,13043679-13043828,13043921-13043992,13044082-13044342,13044680-13044811,13044972-13045226,13045722-13045973,13046216-13046314,13046403-13046567,13046731-13046922,13047180-13048115 HITS At4g25550[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25550.1 CDS gene_syn M7J2.80, M7J2_80 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function protein binding|GO:0005515|16282318|IPI product Cleavage/polyadenylation specificity factor, 25kDa subunit note Cleavage/polyadenylation specificity factor, 25kDa subunit; CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, 25kDa subunit (InterPro:IPR016706); BEST Arabidopsis thaliana protein match is: homolog of CFIM-25 (TAIR:AT4G29820.1); Has 397 Blast hits to 397 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 88; Plants - 70; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). protein_id AT4G25550.1p transcript_id AT4G25550.1 protein_id AT4G25550.1p transcript_id AT4G25550.1 LOCN Exon COOR W/13048519-13048637,13049147-13049192,13049850-13049943,13050035-13050108,13050438-13050524,13050608-13050718,13050802-13050873 HITS At4g25560[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25560.1 CDS gene_syn AtMYB18, M7J2.70, M7J2_70, MYB18, myb domain protein 18 gene MYB18 function Member of the R2R3 factor gene family. go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product myb domain protein 18 note myb domain protein 18 (MYB18); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 19 (TAIR:AT5G52260.1); Has 8724 Blast hits to 8053 proteins in 477 species: Archae - 0; Bacteria - 8; Metazoa - 744; Fungi - 438; Plants - 5747; Viruses - 4; Other Eukaryotes - 1783 (source: NCBI BLink). protein_id AT4G25560.1p transcript_id AT4G25560.1 protein_id AT4G25560.1p transcript_id AT4G25560.1 LOCN Exon COOR W/13052555-13052681,13052769-13052898,13052979-13053573 HITS At4g25570[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25570.1 CDS gene_syn ACYB-2, M7J2.60, M7J2_60 gene ACYB-2 function Encodes cytochrome b561. go_component vacuole|GO:0005773|15215502|IDA go_component vacuole|GO:0005773|15539469|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component integral to membrane|GO:0016021||ISS go_function carbon-monoxide oxygenase activity|GO:0008805||ISS product Cytochrome b561/ferric reductase transmembrane protein family note ACYB-2; FUNCTIONS IN: carbon-monoxide oxygenase activity; LOCATED IN: integral to membrane, chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: cytochrome B561-1 (TAIR:AT5G38630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25570.1p transcript_id AT4G25570.1 protein_id AT4G25570.1p transcript_id AT4G25570.1 LOCN Exon COOR C/13053887-13054213,13054522-13054721,13054846-13054894,13055375-13055518 HITS At4g25580[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25580.1 CDS gene_syn M7J2.50, M7J2_50 go_component cellular_component|GO:0005575||ND product CAP160 protein note CAP160 protein; CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418); BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.1); Has 292 Blast hits to 249 proteins in 85 species: Archae - 0; Bacteria - 26; Metazoa - 66; Fungi - 33; Plants - 116; Viruses - 9; Other Eukaryotes - 42 (source: NCBI BLink). protein_id AT4G25580.1p transcript_id AT4G25580.1 protein_id AT4G25580.1p transcript_id AT4G25580.1 LOCN Exon COOR W/13056320-13056395,13056514-13056717,13056797-13057189,13057293-13057460,13057535-13058479,13058563-13058657