CLON JAtY54O02[About JAtY] 
TYPE JAtY TAC
CHRO chr4
EVAL 0.0
COOR W/13012060-13108496

HITS At4g25450[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25450.1 CDS gene_syn ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, AT4G25460, ATNAP8, NAP8, T30C3.5, non-intrinsic ABC protein 8 gene NAP8 function member of NAP subfamily go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12766230|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component membrane|GO:0016020|17432890|IDA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_function transporter activity|GO:0005215|11346655|ISS go_function transporter activity|GO:0005215||ISS go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS product non-intrinsic ABC protein 8 note non-intrinsic ABC protein 8 (NAP8); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1); Has 416986 Blast hits to 378266 proteins in 4104 species: Archae - 7380; Bacteria - 322963; Metazoa - 9904; Fungi - 7465; Plants - 5560; Viruses - 14; Other Eukaryotes - 63700 (source: NCBI BLink). protein_id AT4G25450.1p transcript_id AT4G25450.1 protein_id AT4G25450.1p transcript_id AT4G25450.1 LOCN Exon COOR C/13009845-13010081,13010231-13010287,13010373-13010429,13010517-13010651,13010738-13010827,13010932-13011080,13011184-13011463,13011553-13011615,13011949-13012077,13012185-13012235,13012342-13012442,13012559-13012649,13012844-13012945,13013033-13013056,13013158-13013345,13013522-13013912 HITS At4g25450[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25450.3 CDS gene_syn ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, AT4G25460, ATNAP8, NAP8, T30C3.5, non-intrinsic ABC protein 8 gene NAP8 function member of NAP subfamily go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_function transporter activity|GO:0005215|11346655|ISS go_function transporter activity|GO:0005215||ISS go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS product non-intrinsic ABC protein 8 note non-intrinsic ABC protein 8 (NAP8); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1); Has 420091 Blast hits to 380969 proteins in 4118 species: Archae - 7380; Bacteria - 326284; Metazoa - 9897; Fungi - 7311; Plants - 5559; Viruses - 14; Other Eukaryotes - 63646 (source: NCBI BLink). protein_id AT4G25450.3p transcript_id AT4G25450.3 protein_id AT4G25450.3p transcript_id AT4G25450.3 LOCN Exon COOR C/13009845-13010081,13010231-13010287,13010373-13010429,13010517-13010651,13010738-13010827,13010932-13011080,13011184-13011463,13011553-13011615,13011949-13012077,13012185-13012235,13012342-13012442,13012559-13012649,13012844-13012945,13013033-13013056,13013158-13013229 HITS At4g25450[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25450.2 CDS gene_syn ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, AT4G25460, ATNAP8, NAP8, T30C3.5, non-intrinsic ABC protein 8 gene NAP8 function member of NAP subfamily go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_function transporter activity|GO:0005215|11346655|ISS go_function transporter activity|GO:0005215||ISS go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS product non-intrinsic ABC protein 8 note non-intrinsic ABC protein 8 (NAP8); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140); BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT4G25450.2p transcript_id AT4G25450.2 protein_id AT4G25450.2p transcript_id AT4G25450.2 LOCN Exon COOR C/13010367-13010429,13010517-13010651,13010738-13010827,13010932-13011080,13011184-13011463,13011553-13011615,13011949-13012077,13012185-13012235,13012342-13012442,13012559-13012649,13012844-13012945,13013033-13013056,13013158-13013345,13013522-13013912 HITS At4g25470[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25470.1 CDS gene_syn ATCBF2, C-repeat/DRE binding factor 2, CBF2, DRE/CRT-BINDING PROTEIN, DRE/CRT-BINDING PROTEIN 1C, DREB1C, FREEZING TOLERANCE QTL 4, FTQ4, T30C3.12 gene CBF2 function Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway. go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process circadian rhythm|GO:0007623|15728337|IEP go_process response to cold|GO:0009409|16258011|IEP go_process response to cold|GO:0009409|9735350|TAS go_process response to cold|GO:0009409|9952441|IEP go_process cold acclimation|GO:0009631|15356394|IMP go_process response to abscisic acid stimulus|GO:0009737|15247382|IEP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function transcription activator activity|GO:0016563|9707537|TAS go_function transcription activator activity|GO:0016563|9952441|ISS product C-repeat/DRE binding factor 2 note C-repeat/DRE binding factor 2 (CBF2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: C-repeat/DRE binding factor 1 (TAIR:AT4G25490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25470.1p transcript_id AT4G25470.1 protein_id AT4G25470.1p transcript_id AT4G25470.1 LOCN Exon COOR C/13015436-13016086 HITS At4g25480[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25480.1 CDS gene_syn ATCBF3, C-REPEAT BINDING FACTOR 3, CBF3, DREB1A, T30C3.3, TRANSCRIPTIONAL ACTIVATOR CBF3, dehydration response element B1A gene DREB1A function encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid. go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process circadian rhythm|GO:0007623|15728337|IEP go_process response to cold|GO:0009409|10096298|IMP go_process response to cold|GO:0009409|12164808|IDA go_process response to cold|GO:0009409|16258011|IEP go_process response to cold|GO:0009409|9735350|TAS go_process response to water deprivation|GO:0009414|11158529|IDA go_process response to water deprivation|GO:0009414|16617101|IMP go_process cold acclimation|GO:0009631|18093929|IMP go_process response to abscisic acid stimulus|GO:0009737|15247382|IEP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11158529|IDA go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function transcription activator activity|GO:0016563|9707537|TAS product dehydration response element B1A note dehydration response element B1A (DREB1A); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: C-repeat/DRE binding factor 2 (TAIR:AT4G25470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25480.1p transcript_id AT4G25480.1 protein_id AT4G25480.1p transcript_id AT4G25480.1 LOCN Exon COOR C/13018353-13019003 HITS At4g25490[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25490.1 CDS gene_syn ATCBF1, C-repeat/DRE binding factor 1, CBF1, DRE BINDING PROTEIN 1B, DREB1B, T30C3.11, TRANSCRIPTIONAL ACTIVATOR CBF1 gene CBF1 function Transcriptional activator that binds to the DRE/CRT regulatory element and induces COR (cold-regulated) gene expression increasing plant freezing tolerance. It encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid. go_component nucleus|GO:0005634|9023378|IC go_process circadian rhythm|GO:0007623|15728337|IEP go_process response to cold|GO:0009409|16258011|IEP go_process response to cold|GO:0009409|9023378|IMP go_process response to cold|GO:0009409|9707537|TAS go_process response to cold|GO:0009409|9735350|TAS go_process response to water deprivation|GO:0009414|9023378|IEP go_process cold acclimation|GO:0009631|18093929|IMP go_process cold acclimation|GO:0009631|9525853|IMP go_process cold acclimation|GO:0009631|9735350|IEP go_process response to abscisic acid stimulus|GO:0009737|15247382|IEP go_function DNA binding|GO:0003677|9023378|IDA go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function transcription activator activity|GO:0016563|9023378|IDA go_function transcription activator activity|GO:0016563|9023378|IGI go_function transcription activator activity|GO:0016563|9707537|TAS product C-repeat/DRE binding factor 1 note C-repeat/DRE binding factor 1 (CBF1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: C-repeat/DRE binding factor 2 (TAIR:AT4G25470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25490.1p transcript_id AT4G25490.1 protein_id AT4G25490.1p transcript_id AT4G25490.1 LOCN Exon COOR C/13021921-13022562 HITS At4g25500[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25500.1 CDS gene_syn ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ARGININE/SERINE-RICH SPLICING FACTOR, AT-SRP40, ATRSP35, ATRSP40, RSP35, SPLICING FACTOR AT-SRP40, T30C3.9, arginine/serine-rich splicing factor 35 gene RSP35 function encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component spliceosomal complex|GO:0005681|8989882|ISS go_component nuclear speck|GO:0016607|15133128|IDA go_process nuclear mRNA splicing, via spliceosome|GO:0000398|8989882|ISS go_process RNA splicing|GO:0008380|16807317|NAS go_function RNA binding|GO:0003723||ISS product arginine/serine-rich splicing factor 35 note arginine/serine-rich splicing factor 35 (RSP35); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, spliceosomal complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2); Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10; Bacteria - 734; Metazoa - 9656; Fungi - 1783; Plants - 2169; Viruses - 46; Other Eukaryotes - 1420 (source: NCBI BLink). protein_id AT4G25500.1p transcript_id AT4G25500.1 protein_id AT4G25500.1p transcript_id AT4G25500.1 LOCN Exon COOR W/13025168-13025273,13026056-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS At4g25500[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25500.4 CDS gene_syn ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ARGININE/SERINE-RICH SPLICING FACTOR, AT-SRP40, ATRSP35, ATRSP40, RSP35, SPLICING FACTOR AT-SRP40, T30C3.9, arginine/serine-rich splicing factor 35 gene RSP35 function encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component spliceosomal complex|GO:0005681|8989882|ISS go_component nuclear speck|GO:0016607|15133128|IDA go_process nuclear mRNA splicing, via spliceosome|GO:0000398|8989882|ISS go_process RNA splicing|GO:0008380|16807317|NAS go_function RNA binding|GO:0003723||ISS product arginine/serine-rich splicing factor 35 note arginine/serine-rich splicing factor 35 (RSP35); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, spliceosomal complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2). protein_id AT4G25500.4p transcript_id AT4G25500.4 protein_id AT4G25500.4p transcript_id AT4G25500.4 LOCN Exon COOR W/13025168-13025273,13026056-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS At4g25500[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25500.3 CDS gene_syn ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ARGININE/SERINE-RICH SPLICING FACTOR, AT-SRP40, ATRSP35, ATRSP40, RSP35, SPLICING FACTOR AT-SRP40, T30C3.9, arginine/serine-rich splicing factor 35 gene RSP35 function encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component spliceosomal complex|GO:0005681|8989882|ISS go_component nuclear speck|GO:0016607|15133128|IDA go_process nuclear mRNA splicing, via spliceosome|GO:0000398|8989882|ISS go_process RNA splicing|GO:0008380|16807317|NAS go_function RNA binding|GO:0003723||ISS product arginine/serine-rich splicing factor 35 note arginine/serine-rich splicing factor 35 (RSP35); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, spliceosomal complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.4); Has 12133 Blast hits to 9335 proteins in 376 species: Archae - 0; Bacteria - 104; Metazoa - 8049; Fungi - 1339; Plants - 1578; Viruses - 48; Other Eukaryotes - 1015 (source: NCBI BLink). protein_id AT4G25500.3p transcript_id AT4G25500.3 protein_id AT4G25500.3p transcript_id AT4G25500.3 LOCN Exon COOR W/13025850-13025856,13026056-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS At4g25500[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25500.2 CDS gene_syn ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, ARGININE/SERINE-RICH SPLICING FACTOR, AT-SRP40, ATRSP35, ATRSP40, RSP35, SPLICING FACTOR AT-SRP40, T30C3.9, arginine/serine-rich splicing factor 35 gene RSP35 function encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_component spliceosomal complex|GO:0005681|8989882|ISS go_component nuclear speck|GO:0016607|15133128|IDA go_process nuclear mRNA splicing, via spliceosome|GO:0000398|8989882|ISS go_process RNA splicing|GO:0008380|16807317|NAS go_function RNA binding|GO:0003723||ISS product arginine/serine-rich splicing factor 35 note arginine/serine-rich splicing factor 35 (RSP35); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, spliceosomal complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT4G25500.2p transcript_id AT4G25500.2 protein_id AT4G25500.2p transcript_id AT4G25500.2 LOCN Exon COOR W/13026073-13026168,13026257-13026498,13026572-13027129,13027210-13027243 HITS At4g25510[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25510.1 CDS gene_syn T30C3.8 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT4G25510.1p transcript_id AT4G25510.1 protein_id AT4G25510.1p transcript_id AT4G25510.1 LOCN Exon COOR C/13027443-13027503,13027648-13028036 HITS At4g25515[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25515.1 CDS gene_syn SEUSS-like 3, SLK3 gene SLK3 go_function transcription regulator activity|GO:0030528||ISS product SEUSS-like 3 note SEUSS-like 3 (SLK3); BEST Arabidopsis thaliana protein match is: SEUSS-like 1 (TAIR:AT4G25520.1); Has 4377 Blast hits to 3114 proteins in 231 species: Archae - 0; Bacteria - 84; Metazoa - 736; Fungi - 339; Plants - 190; Viruses - 30; Other Eukaryotes - 2998 (source: NCBI BLink). protein_id AT4G25515.1p transcript_id AT4G25515.1 protein_id AT4G25515.1p transcript_id AT4G25515.1 LOCN Exon COOR W/13028219-13028749,13028832-13028963,13029129-13029177,13029352-13029566,13029701-13029769,13030031-13030131,13030266-13030359,13030445-13030514,13030667-13031463 HITS At4g25520[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25520.1 CDS gene_syn M7J2.110, M7J2_110, SEUSS-like 1, SLK1 gene SLK1 go_process embryo development|GO:0009790|20007451|IMP go_process gynoecium development|GO:0048467|20007451|IMP go_process ovule development|GO:0048481|20007451|IMP go_function transcription regulator activity|GO:0030528||ISS product SEUSS-like 1 note SEUSS-like 1 (SLK1); BEST Arabidopsis thaliana protein match is: SEUSS-like 3 (TAIR:AT4G25515.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25520.1p transcript_id AT4G25520.1 protein_id AT4G25520.1p transcript_id AT4G25520.1 LOCN Exon COOR C/13032450-13033351,13033522-13033591,13033674-13033767,13033860-13033960,13034222-13034290,13034392-13034606,13034767-13034815,13034981-13035112,13035189-13035803 HITS At4g25530[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25530.1 CDS gene_syn FLOWERING WAGENINGEN, FWA, HDG6, HOMEODOMAIN GLABROUS 6, M7J2.100, M7J2_100 gene FWA function Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation. go_component nucleus|GO:0005634|14631047|IDA go_component nucleus|GO:0005634||ISS go_process regulation of gene expression by genetic imprinting|GO:0006349|16648367|IEP go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process positive regulation of flower development|GO:0009911|9401118|IMP go_process gene silencing by RNA|GO:0031047|17105345|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function protein binding|GO:0005515|17189287|IPI go_function protein homodimerization activity|GO:0042803|17189287|IPI product FLOWERING WAGENINGEN note FLOWERING WAGENINGEN (FWA); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 7 (TAIR:AT5G52170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25530.1p transcript_id AT4G25530.1 protein_id AT4G25530.1p transcript_id AT4G25530.1 LOCN Exon COOR W/13039312-13039481,13039603-13039720,13039917-13040501,13040589-13040690,13040785-13040988,13041160-13041331,13041445-13041812,13041901-13042242 HITS At4g25540[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25540.1 CDS gene_syn ATMSH3, M7J2.90, M7J2_90, MSH3, homolog of DNA mismatch repair protein MSH3 gene MSH3 function encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G). go_process mismatch repair|GO:0006298|10852942|ISS go_function damaged DNA binding|GO:0003684|10852942|IDA go_function protein binding|GO:0005515|10852942|IPI go_function mismatched DNA binding|GO:0030983|10852942|IDA product homolog of DNA mismatch repair protein MSH3 note homolog of DNA mismatch repair protein MSH3 (MSH3); CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695); BEST Arabidopsis thaliana protein match is: MUTS homolog 6 (TAIR:AT4G02070.2); Has 14547 Blast hits to 13713 proteins in 2703 species: Archae - 153; Bacteria - 9793; Metazoa - 705; Fungi - 864; Plants - 451; Viruses - 3; Other Eukaryotes - 2578 (source: NCBI BLink). protein_id AT4G25540.1p transcript_id AT4G25540.1 protein_id AT4G25540.1p transcript_id AT4G25540.1 LOCN Exon COOR C/13042700-13042969,13043133-13043594,13043679-13043828,13043921-13043992,13044082-13044342,13044680-13044811,13044972-13045226,13045722-13045973,13046216-13046314,13046403-13046567,13046731-13046922,13047180-13048115 HITS At4g25550[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25550.1 CDS gene_syn M7J2.80, M7J2_80 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function protein binding|GO:0005515|16282318|IPI product Cleavage/polyadenylation specificity factor, 25kDa subunit note Cleavage/polyadenylation specificity factor, 25kDa subunit; CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, 25kDa subunit (InterPro:IPR016706); BEST Arabidopsis thaliana protein match is: homolog of CFIM-25 (TAIR:AT4G29820.1); Has 397 Blast hits to 397 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 88; Plants - 70; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). protein_id AT4G25550.1p transcript_id AT4G25550.1 protein_id AT4G25550.1p transcript_id AT4G25550.1 LOCN Exon COOR W/13048519-13048637,13049147-13049192,13049850-13049943,13050035-13050108,13050438-13050524,13050608-13050718,13050802-13050873 HITS At4g25560[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25560.1 CDS gene_syn AtMYB18, M7J2.70, M7J2_70, MYB18, myb domain protein 18 gene MYB18 function Member of the R2R3 factor gene family. go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product myb domain protein 18 note myb domain protein 18 (MYB18); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 19 (TAIR:AT5G52260.1); Has 8724 Blast hits to 8053 proteins in 477 species: Archae - 0; Bacteria - 8; Metazoa - 744; Fungi - 438; Plants - 5747; Viruses - 4; Other Eukaryotes - 1783 (source: NCBI BLink). protein_id AT4G25560.1p transcript_id AT4G25560.1 protein_id AT4G25560.1p transcript_id AT4G25560.1 LOCN Exon COOR W/13052555-13052681,13052769-13052898,13052979-13053573 HITS At4g25570[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25570.1 CDS gene_syn ACYB-2, M7J2.60, M7J2_60 gene ACYB-2 function Encodes cytochrome b561. go_component vacuole|GO:0005773|15215502|IDA go_component vacuole|GO:0005773|15539469|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component integral to membrane|GO:0016021||ISS go_function carbon-monoxide oxygenase activity|GO:0008805||ISS product Cytochrome b561/ferric reductase transmembrane protein family note ACYB-2; FUNCTIONS IN: carbon-monoxide oxygenase activity; LOCATED IN: integral to membrane, chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: cytochrome B561-1 (TAIR:AT5G38630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25570.1p transcript_id AT4G25570.1 protein_id AT4G25570.1p transcript_id AT4G25570.1 LOCN Exon COOR C/13053887-13054213,13054522-13054721,13054846-13054894,13055375-13055518 HITS At4g25580[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25580.1 CDS gene_syn M7J2.50, M7J2_50 go_component cellular_component|GO:0005575||ND product CAP160 protein note CAP160 protein; CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418); BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.1); Has 292 Blast hits to 249 proteins in 85 species: Archae - 0; Bacteria - 26; Metazoa - 66; Fungi - 33; Plants - 116; Viruses - 9; Other Eukaryotes - 42 (source: NCBI BLink). protein_id AT4G25580.1p transcript_id AT4G25580.1 protein_id AT4G25580.1p transcript_id AT4G25580.1 LOCN Exon COOR W/13056320-13056395,13056514-13056717,13056797-13057189,13057293-13057460,13057535-13058479,13058563-13058657 HITS At4g25585[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25585.1 tRNA gene_syn 68201.TRNA-SER-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Ser (anticodon: TGA) transcript_id AT4G25585.1 LOCN Exon COOR C/13058832-13058913 HITS At4g25590[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25590.1 CDS gene_syn ADF7, M7J2.40, M7J2_40, actin depolymerizing factor 7 gene ADF7 go_component intracellular|GO:0005622||IEA go_function actin binding|GO:0003779||IEA go_component intracellular|GO:0005622||ISS go_process biological_process|GO:0008150||ND product actin depolymerizing factor 7 note actin depolymerizing factor 7 (ADF7); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 10 (TAIR:AT5G52360.1); Has 1500 Blast hits to 1497 proteins in 263 species: Archae - 0; Bacteria - 3; Metazoa - 654; Fungi - 151; Plants - 513; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink). protein_id AT4G25590.1p transcript_id AT4G25590.1 protein_id AT4G25590.1p transcript_id AT4G25590.1 LOCN Exon COOR C/13059137-13059287,13059388-13059647,13060048-13060050 HITS At4g25600[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25600.1 CDS gene_syn M7J2.30, M7J2_30 go_process oxidation reduction|GO:0055114||IEA go_function iron ion binding|GO:0005506||IEA go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|GO:0016705||IEA go_function L-ascorbic acid binding|GO:0031418||IEA product Oxoglutarate/iron-dependent oxygenase note Oxoglutarate/iron-dependent oxygenase; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Metridin-like ShK toxin (InterPro:IPR003582); BEST Arabidopsis thaliana protein match is: Oxoglutarate/iron-dependent oxygenase (TAIR:AT3G28480.1); Has 1193 Blast hits to 1161 proteins in 233 species: Archae - 0; Bacteria - 285; Metazoa - 424; Fungi - 0; Plants - 372; Viruses - 8; Other Eukaryotes - 104 (source: NCBI BLink). protein_id AT4G25600.1p transcript_id AT4G25600.1 protein_id AT4G25600.1p transcript_id AT4G25600.1 LOCN Exon COOR W/13060712-13060791,13060912-13061031,13061146-13061203,13061281-13061334,13061592-13061649,13061768-13061940,13062027-13062359 HITS At4g25610[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25610.1 CDS gene_syn M7J2.20, M7J2_20 go_component intracellular|GO:0005622||IEA go_function zinc ion binding|GO:0008270||IEA go_process biological_process|GO:0008150||ND go_function nucleic acid binding|GO:0003676||ISS go_function zinc ion binding|GO:0008270||ISS product C2H2-like zinc finger protein note C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); Has 1178 Blast hits to 1100 proteins in 218 species: Archae - 0; Bacteria - 148; Metazoa - 375; Fungi - 111; Plants - 98; Viruses - 2; Other Eukaryotes - 444 (source: NCBI BLink). protein_id AT4G25610.1p transcript_id AT4G25610.1 protein_id AT4G25610.1p transcript_id AT4G25610.1 LOCN Exon COOR W/13063801-13063945,13064168-13064295,13064402-13064446,13064533-13064586,13065064-13065168,13065270-13065473,13065597-13065682,13065774-13066588,13066682-13066860 HITS At4g25610[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25610.2 CDS gene_syn M7J2.20, M7J2_20 go_component intracellular|GO:0005622||IEA go_function zinc ion binding|GO:0008270||IEA go_process biological_process|GO:0008150||ND go_function nucleic acid binding|GO:0003676||ISS go_function zinc ion binding|GO:0008270||ISS product C2H2-like zinc finger protein note C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); Has 400 Blast hits to 392 proteins in 117 species: Archae - 0; Bacteria - 39; Metazoa - 136; Fungi - 49; Plants - 38; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink). protein_id AT4G25610.2p transcript_id AT4G25610.2 protein_id AT4G25610.2p transcript_id AT4G25610.2 LOCN Exon COOR W/13063801-13063945,13064168-13064295,13064402-13064446,13064533-13064586,13065064-13065168,13065270-13065473,13065597-13065682,13065774-13066588,13066693-13066763,13066819-13066827,13066917-13066970 HITS At4g25620[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25620.1 CDS gene_syn M7J2.10, M7J2_10 go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product hydroxyproline-rich glycoprotein family protein note hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 940 Blast hits to 722 proteins in 169 species: Archae - 0; Bacteria - 80; Metazoa - 158; Fungi - 130; Plants - 239; Viruses - 59; Other Eukaryotes - 274 (source: NCBI BLink). protein_id AT4G25620.1p transcript_id AT4G25620.1 protein_id AT4G25620.1p transcript_id AT4G25620.1 LOCN Exon COOR C/13067447-13068700,13069201-13069296 HITS At4g25630[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25630.1 CDS gene_syn ATFIB2, FIB2, L73G19.10, L73G19_10, fibrillarin 2 gene FIB2 function encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated. go_component nucleolus|GO:0005730|15496452|IDA go_component nucleolus|GO:0005730|10829025|IDA go_component nucleolus|GO:0005730|10829025|IMP go_process RNA methylation|GO:0001510|10829025|IGI go_process rRNA processing|GO:0006364|10829025|IGI go_process response to salt stress|GO:0009651|11351099|IEP go_function snoRNA binding|GO:0030515|10829025|ISS product fibrillarin 2 note fibrillarin 2 (FIB2); FUNCTIONS IN: snoRNA binding; INVOLVED IN: response to salt stress, RNA methylation, rRNA processing; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibrillarin (InterPro:IPR000692); BEST Arabidopsis thaliana protein match is: fibrillarin 1 (TAIR:AT5G52470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25630.1p transcript_id AT4G25630.1 protein_id AT4G25630.1p transcript_id AT4G25630.1 LOCN Exon COOR W/13074239-13074257,13074500-13074840,13074934-13075029,13075114-13075191,13075279-13075455,13075870-13075938,13076023-13076205 HITS At4g25631[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25631.1 snoRNA gene_syn U60.2F gene U60.2F function Encodes a novel C/D box snoRNA (U60.2f) encoded within the 5th intron of FIB2. Gb: AF228365 go_component box C/D snoRNP complex|GO:0031428||TAS go_process rRNA methylation|GO:0031167||TAS go_function molecular_function|GO:0003674||ND product U60.2F; snoRNA transcript_id AT4G25631.1 LOCN Exon COOR W/13075563-13075635 HITS At4g25635[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25635.1 tRNA gene_syn 67156.TRNA-LEU-1 go_component cellular_component|GO:0005575||ND go_process translational elongation|GO:0006414|8980477|TAS go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS product pre-tRNA note tRNA-Leu (anticodon: CAA) transcript_id AT4G25635.1 LOCN Exon COOR C/13076574-13076657 HITS At4g25640[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25640.2 CDS gene_syn ATDTX35, DTX35, FFT, FLOWER FLAVONOID TRANSPORTER, L73G19.20, L73G19_20, detoxifying efflux carrier 35 gene DTX35 function Encodes a multidrug and toxin efflux family transporter. Involved in flavonoid metabolism, affecting Root growth, seed development and germination, and pollen development, release and viability. go_function drug transmembrane transporter activity|GO:0015238||IEA go_function antiporter activity|GO:0015297||IEA go_component membrane|GO:0016020|11152613|ISS go_process pollen development|GO:0009555|19995827|IMP go_process flavonoid metabolic process|GO:0009812|19995827|IMP go_process anther dehiscence|GO:0009901|19995827|IMP go_function antiporter activity|GO:0015297||ISS product detoxifying efflux carrier 35 note detoxifying efflux carrier 35 (DTX35); FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: anther dehiscence, flavonoid metabolic process, pollen development; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G00350.1). protein_id AT4G25640.2p transcript_id AT4G25640.2 protein_id AT4G25640.2p transcript_id AT4G25640.2 LOCN Exon COOR C/13076576-13076657,13076957-13077024,13077109-13077195,13077270-13077388,13077475-13077713,13077790-13077846,13077938-13078563,13078699-13078965 HITS At4g25640[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25640.1 CDS gene_syn ATDTX35, DTX35, FFT, FLOWER FLAVONOID TRANSPORTER, L73G19.20, L73G19_20, detoxifying efflux carrier 35 gene DTX35 function Encodes a multidrug and toxin efflux family transporter. Involved in flavonoid metabolism, affecting Root growth, seed development and germination, and pollen development, release and viability. go_component plasma membrane|GO:0005886|17151019|IDA go_function drug transmembrane transporter activity|GO:0015238||IEA go_function antiporter activity|GO:0015297||IEA go_component membrane|GO:0016020|11152613|ISS go_process pollen development|GO:0009555|19995827|IMP go_process flavonoid metabolic process|GO:0009812|19995827|IMP go_process anther dehiscence|GO:0009901|19995827|IMP go_function antiporter activity|GO:0015297||ISS product detoxifying efflux carrier 35 note detoxifying efflux carrier 35 (DTX35); FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: anther dehiscence, flavonoid metabolic process, pollen development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G00350.1); Has 11724 Blast hits to 11622 proteins in 2105 species: Archae - 230; Bacteria - 8860; Metazoa - 143; Fungi - 322; Plants - 1354; Viruses - 0; Other Eukaryotes - 815 (source: NCBI BLink). protein_id AT4G25640.1p transcript_id AT4G25640.1 protein_id AT4G25640.1p transcript_id AT4G25640.1 LOCN Exon COOR C/13076953-13077024,13077109-13077195,13077270-13077388,13077475-13077713,13077790-13077846,13077938-13078563,13078699-13078965 HITS At4g25650[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25650.1 CDS gene_syn ACD1-LIKE, ACD1-like, L73G19.30, L73G19_30, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, PTC52, TIC55-IV, TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV gene ACD1-LIKE function Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment. go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast envelope|GO:0009941|12766230|IDA go_process oxidation reduction|GO:0055114||IEA go_function chlorophyllide a oxygenase [overall] activity|GO:0010277||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA go_function electron carrier activity|GO:0009055||ISS product ACD1-like note ACD1-like (ACD1-LIKE); FUNCTIONS IN: electron carrier activity, oxidoreductase activity, 2 iron, 2 sulfur cluster binding, chlorophyllide a oxygenase [overall] activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Pheophorbide a oxygenase (InterPro:IPR013626); BEST Arabidopsis thaliana protein match is: Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (TAIR:AT3G44880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25650.1p transcript_id AT4G25650.1 protein_id AT4G25650.1p transcript_id AT4G25650.1 LOCN Exon COOR C/13081021-13081276,13081351-13081541,13081635-13081823,13081906-13082090,13082160-13082245,13082327-13082514,13082638-13083153 HITS At4g25650[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25650.2 CDS gene_syn ACD1-LIKE, ACD1-like, L73G19.30, L73G19_30, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, PTC52, TIC55-IV, TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV gene ACD1-LIKE function Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment. go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast envelope|GO:0009941|12766230|IDA go_process oxidation reduction|GO:0055114||IEA go_function chlorophyllide a oxygenase [overall] activity|GO:0010277||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA go_function electron carrier activity|GO:0009055||ISS product ACD1-like note ACD1-like (ACD1-LIKE); FUNCTIONS IN: electron carrier activity, oxidoreductase activity, 2 iron, 2 sulfur cluster binding, chlorophyllide a oxygenase [overall] activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Pheophorbide a oxygenase (InterPro:IPR013626); BEST Arabidopsis thaliana protein match is: Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (TAIR:AT3G44880.1); Has 3440 Blast hits to 3433 proteins in 618 species: Archae - 4; Bacteria - 2370; Metazoa - 19; Fungi - 3; Plants - 426; Viruses - 0; Other Eukaryotes - 618 (source: NCBI BLink). protein_id AT4G25650.2p transcript_id AT4G25650.2 protein_id AT4G25650.2p transcript_id AT4G25650.2 LOCN Exon COOR C/13081021-13081276,13081351-13081541,13081635-13081823,13081906-13082245,13082327-13082514,13082638-13083153 HITS At4g25660[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25660.1 CDS gene_syn L73G19.40, L73G19_40 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product PPPDE putative thiol peptidase family protein note PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT4G25680.1); Has 753 Blast hits to 753 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 205; Fungi - 55; Plants - 348; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink). protein_id AT4G25660.1p transcript_id AT4G25660.1 protein_id AT4G25660.1p transcript_id AT4G25660.1 LOCN Exon COOR W/13083677-13083811,13084183-13084444,13084523-13084590,13084687-13084989 HITS At4g25670[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25670.1 CDS gene_syn L73G19.50, L73G19_50 go_component cellular_component|GO:0005575||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25690.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25670.1p transcript_id AT4G25670.1 protein_id AT4G25670.1p transcript_id AT4G25670.1 LOCN Exon COOR C/13085431-13085997 HITS At4g25670[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25670.2 CDS gene_syn L73G19.50, L73G19_50 go_component cellular_component|GO:0005575||ND product unknown protein note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25690.2). protein_id AT4G25670.2p transcript_id AT4G25670.2 protein_id AT4G25670.2p transcript_id AT4G25670.2 LOCN Exon COOR C/13085431-13085997 HITS At4g25672[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25672.1 CDS gene_syn CPuORF12, conserved peptide upstream open reading frame 12 gene CPuORF12 function Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF12 represents a conserved upstream opening reading frame relative to major ORF AT4G25670.1 product conserved peptide upstream open reading frame 12 note conserved peptide upstream open reading frame 12 (CPuORF12); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 14 (TAIR:AT5G52552.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25672.1p transcript_id AT4G25672.1 protein_id AT4G25672.1p transcript_id AT4G25672.1 LOCN Exon COOR C/13086069-13086227 HITS At4g25680[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25680.1 CDS gene_syn L73G19.60, L73G19_60 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product PPPDE putative thiol peptidase family protein note PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT4G25660.1); Has 754 Blast hits to 754 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 207; Fungi - 56; Plants - 348; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). protein_id AT4G25680.1p transcript_id AT4G25680.1 protein_id AT4G25680.1p transcript_id AT4G25680.1 LOCN Exon COOR W/13088425-13088559,13089158-13089419,13089509-13089576,13089659-13089952 HITS At4g25690[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25690.1 CDS gene_syn L73G19.70, L73G19_70 go_component cellular_component|GO:0005575||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25670.2); Has 73 Blast hits to 60 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT4G25690.1p transcript_id AT4G25690.1 protein_id AT4G25690.1p transcript_id AT4G25690.1 LOCN Exon COOR C/13090421-13090996 HITS At4g25690[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25690.2 CDS gene_syn L73G19.70, L73G19_70 go_component cellular_component|GO:0005575||ND product unknown protein note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25670.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT4G25690.2p transcript_id AT4G25690.2 protein_id AT4G25690.2p transcript_id AT4G25690.2 LOCN Exon COOR C/13090421-13090996 HITS At4g25692[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25692.1 CDS gene_syn CPuORF13, conserved peptide upstream open reading frame 13 gene CPuORF13 function Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF13 represents a conserved upstream opening reading frame relative to major ORF AT4G25690.1 product conserved peptide upstream open reading frame 13 note conserved peptide upstream open reading frame 13 (CPuORF13); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 12 (TAIR:AT4G25672.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25692.1p transcript_id AT4G25692.1 protein_id AT4G25692.1p transcript_id AT4G25692.1 LOCN Exon COOR C/13091072-13091239 HITS At4g25700[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25700.1 CDS gene_syn B1, BCH1, BETA CAROTENOID HYDROXYLASE 1, BETA-OHASE 1, beta-hydroxylase 1, chy1 gene BETA-OHASE 1 function Converts beta-carotene to zeaxanthin via cryptoxanthin. go_component endoplasmic reticulum|GO:0005783||IEA go_component chloroplast|GO:0009507||IEA go_process carotene metabolic process|GO:0016119|8798688|IGI go_process xanthophyll biosynthetic process|GO:0016123|16890225|IGI go_function carotene beta-ring hydroxylase activity|GO:0010291|8798688|IGI go_function carotene beta-ring hydroxylase activity|GO:0010291||ISS product beta-hydroxylase 1 note beta-hydroxylase 1 (BETA-OHASE 1); FUNCTIONS IN: carotene beta-ring hydroxylase activity; INVOLVED IN: xanthophyll biosynthetic process, carotene metabolic process; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: beta-carotene hydroxylase 2 (TAIR:AT5G52570.1); Has 865 Blast hits to 862 proteins in 172 species: Archae - 20; Bacteria - 141; Metazoa - 0; Fungi - 0; Plants - 524; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink). protein_id AT4G25700.1p transcript_id AT4G25700.1 protein_id AT4G25700.1p transcript_id AT4G25700.1 LOCN Exon COOR C/13094142-13094246,13094333-13094389,13094495-13094620,13094995-13095129,13095202-13095273,13095350-13095409,13095489-13095866 HITS At4g25700[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25700.2 CDS gene_syn B1, BCH1, BETA CAROTENOID HYDROXYLASE 1, BETA-OHASE 1, beta-hydroxylase 1, chy1 gene BETA-OHASE 1 function Converts beta-carotene to zeaxanthin via cryptoxanthin. go_component endoplasmic reticulum|GO:0005783||IEA go_component chloroplast|GO:0009507||IEA go_process carotene metabolic process|GO:0016119|8798688|IGI go_process xanthophyll biosynthetic process|GO:0016123|16890225|IGI go_function carotene beta-ring hydroxylase activity|GO:0010291|8798688|IGI go_function carotene beta-ring hydroxylase activity|GO:0010291||ISS product beta-hydroxylase 1 note beta-hydroxylase 1 (BETA-OHASE 1); FUNCTIONS IN: carotene beta-ring hydroxylase activity; INVOLVED IN: xanthophyll biosynthetic process, carotene metabolic process; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: beta-carotene hydroxylase 2 (TAIR:AT5G52570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT4G25700.2p transcript_id AT4G25700.2 protein_id AT4G25700.2p transcript_id AT4G25700.2 LOCN Exon COOR C/13094965-13095129,13095202-13095273,13095350-13095409,13095489-13095866 HITS At4g25707[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25707.1 CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25707.1p transcript_id AT4G25707.1 protein_id AT4G25707.1p transcript_id AT4G25707.1 LOCN Exon COOR C/13097640-13097762 HITS At4g25710[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25710.1 CDS gene_syn L73G19.90, L73G19_90 go_component cellular_component|GO:0005575||ND product Galactose oxidase/kelch repeat superfamily protein note Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G51250.1); Has 986 Blast hits to 967 proteins in 50 species: Archae - 4; Bacteria - 5; Metazoa - 105; Fungi - 0; Plants - 870; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT4G25710.1p transcript_id AT4G25710.1 protein_id AT4G25710.1p transcript_id AT4G25710.1 LOCN Exon COOR C/13098359-13099531 HITS At4g25710[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25710.2 CDS gene_syn L73G19.90, L73G19_90 go_component cellular_component|GO:0005575||ND product Galactose oxidase/kelch repeat superfamily protein note Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G38680.1). protein_id AT4G25710.2p transcript_id AT4G25710.2 protein_id AT4G25710.2p transcript_id AT4G25710.2 LOCN Exon COOR C/13098625-13098644,13098721-13099531 HITS At4g25719[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25719.1 ncRNA function Potential natural antisense gene, locus overlaps with AT4G25720 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT4G25719.1 LOCN Exon COOR W/13099788-13099814,13100001-13100209,13100742-13101017 HITS At4g25720[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25720.1 CDS gene_syn ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, ATQC, GLUTAMINYL CYCLOTRANSFERASE, L73G19.100, L73G19_100, QC, QCT, glutaminyl cyclase gene QC function This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model. go_process peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase|GO:0017186|17261077|IDA go_function catalytic activity|GO:0003824||ISS go_function glutaminyl-peptide cyclotransferase activity|GO:0016603|17261077|IDA product glutaminyl cyclase note glutaminyl cyclase (QC); FUNCTIONS IN: glutaminyl-peptide cyclotransferase activity, catalytic activity; INVOLVED IN: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine cyclotransferase (InterPro:IPR007788), Nitrous oxide reductase, N-terminal (InterPro:IPR011045); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G25720.1p transcript_id AT4G25720.1 protein_id AT4G25720.1p transcript_id AT4G25720.1 LOCN Exon COOR C/13099929-13100023,13100133-13100187,13100284-13100311,13100417-13100487,13100786-13100883,13100989-13101106,13101352-13101415,13101597-13101661,13101894-13101929,13102063-13102119,13102195-13102470 HITS At4g25720[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25720.3 CDS gene_syn ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, ATQC, GLUTAMINYL CYCLOTRANSFERASE, L73G19.100, L73G19_100, QC, QCT, glutaminyl cyclase gene QC function This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model. go_process peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase|GO:0017186|17261077|IDA go_function catalytic activity|GO:0003824||ISS go_function glutaminyl-peptide cyclotransferase activity|GO:0016603|17261077|IDA product glutaminyl cyclase note glutaminyl cyclase (QC); FUNCTIONS IN: glutaminyl-peptide cyclotransferase activity, catalytic activity; INVOLVED IN: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine cyclotransferase (InterPro:IPR007788), Nitrous oxide reductase, N-terminal (InterPro:IPR011045); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT4G25720.3p transcript_id AT4G25720.3 protein_id AT4G25720.3p transcript_id AT4G25720.3 LOCN Exon COOR C/13099929-13100023,13100133-13100187,13100284-13100311,13100417-13100487,13100846-13100883,13100989-13101106,13101352-13101415,13101597-13101661,13101894-13101929,13102063-13102119,13102195-13102470 HITS At4g25720[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25720.2 CDS gene_syn ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, ATQC, GLUTAMINYL CYCLOTRANSFERASE, L73G19.100, L73G19_100, QC, QCT, glutaminyl cyclase gene QC function This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model. go_process peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase|GO:0017186|17261077|IDA go_function catalytic activity|GO:0003824||ISS go_function glutaminyl-peptide cyclotransferase activity|GO:0016603|17261077|IDA product glutaminyl cyclase note glutaminyl cyclase (QC); FUNCTIONS IN: glutaminyl-peptide cyclotransferase activity, catalytic activity; INVOLVED IN: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine cyclotransferase (InterPro:IPR007788), Nitrous oxide reductase, N-terminal (InterPro:IPR011045); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT4G25720.2p transcript_id AT4G25720.2 protein_id AT4G25720.2p transcript_id AT4G25720.2 LOCN Exon COOR C/13100104-13100187,13100284-13100311,13100417-13100487,13100786-13100883,13100989-13101106,13101352-13101415,13101597-13101661,13101894-13101929,13102063-13102119,13102195-13102470 HITS At4g25730[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25730.1 CDS gene_syn F14M19.10, F14M19_10 go_component nucleus|GO:0005634||IEA go_process rRNA processing|GO:0006364||IEA go_process rRNA methylation|GO:0031167||IEA go_process methylation|GO:0032259||IEA go_function nucleic acid binding|GO:0003676||IEA go_function methyltransferase activity|GO:0008168||IEA go_function methyltransferase activity|GO:0008168||ISS product FtsJ-like methyltransferase family protein note FtsJ-like methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation, rRNA processing, rRNA methylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spb1, C-terminal (InterPro:IPR012920), Ribosomal RNA methyltransferase J (InterPro:IPR015507), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G01230.1); Has 30028 Blast hits to 21157 proteins in 1975 species: Archae - 200; Bacteria - 7297; Metazoa - 8731; Fungi - 3085; Plants - 939; Viruses - 236; Other Eukaryotes - 9540 (source: NCBI BLink). protein_id AT4G25730.1p transcript_id AT4G25730.1 protein_id AT4G25730.1p transcript_id AT4G25730.1 LOCN Exon COOR C/13102906-13103886,13103968-13104085,13104201-13104340,13104534-13104623,13104740-13104929,13105301-13105362,13105451-13105607,13105678-13105724,13105818-13105976,13106074-13106121,13106245-13106718 HITS At4g25740[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25740.1 CDS gene_syn F14M19.20, F14M19_20 go_component membrane|GO:0016020|17432890|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA go_process translation|GO:0006412|11598216|ISS go_function structural constituent of ribosome|GO:0003735|11598216|ISS product RNA binding Plectin/S10 domain-containing protein note RNA binding Plectin/S10 domain-containing protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plectin/S10, N-terminal (InterPro:IPR005326); BEST Arabidopsis thaliana protein match is: RNA binding Plectin/S10 domain-containing protein (TAIR:AT5G52650.1); Has 2455 Blast hits to 1939 proteins in 382 species: Archae - 0; Bacteria - 320; Metazoa - 798; Fungi - 208; Plants - 219; Viruses - 1; Other Eukaryotes - 909 (source: NCBI BLink). protein_id AT4G25740.1p transcript_id AT4G25740.1 protein_id AT4G25740.1p transcript_id AT4G25740.1 LOCN Exon COOR C/13107488-13107568,13107723-13107843,13107926-13108205,13108590-13108638,13108749-13108751 HITS At4g25740[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G25740.2 CDS gene_syn F14M19.20, F14M19_20 go_component membrane|GO:0016020|17432890|IDA go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA go_process translation|GO:0006412|11598216|ISS go_function structural constituent of ribosome|GO:0003735|11598216|ISS product RNA binding Plectin/S10 domain-containing protein note RNA binding Plectin/S10 domain-containing protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plectin/S10, N-terminal (InterPro:IPR005326); BEST Arabidopsis thaliana protein match is: RNA binding Plectin/S10 domain-containing protein (TAIR:AT5G52650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT4G25740.2p transcript_id AT4G25740.2 protein_id AT4G25740.2p transcript_id AT4G25740.2 LOCN Exon COOR C/13107488-13107568,13107723-13107781,13107948-13108205,13108590-13108638,13108749-13108751