CLON AGAGATCACTGCTTTGG[About MPSS sRNA] 
TYPE MPSS sRNA Contig
CHRO chr4
EVAL 100.00
COOR C/13332015-13332031
NOTE 1, +0 2 0 0 0

HITS At4g26360[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G26360.1 mRNA LOCN Exon COOR C/13328763-13332375 HITS At4g26360[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G26360 TE pseudo gene_syn T25K17.1 note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.9e-40 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) LOCN Exon COOR C/13328763-13332375 CLON AGAGATCACTGCTTTGG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR W/19917095-19917111 NOTE 1, +0 2 0 0 0 HITS At3g53750[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT3G53750.1 CDS gene_syn ACT3, actin 3 gene ACT3 function Member of the Actin gene family. Expressed in mature pollen. go_component cell wall|GO:0005618|16287169|IDA go_component nucleus|GO:0005634|14617066|IDA go_component cytoskeleton|GO:0005856||TAS go_process cytoskeleton organization|GO:0007010||TAS go_function structural constituent of cytoskeleton|GO:0005200|8597657|ISS go_function structural constituent of cytoskeleton|GO:0005200||ISS product actin 3 note actin 3 (ACT3); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: cytoskeleton organization; LOCATED IN: cell wall, cytoskeleton, nucleus; EXPRESSED IN: male gametophyte, seed; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 1 (TAIR:AT2G37620.2); Has 15230 Blast hits to 14806 proteins in 3046 species: Archae - 8; Bacteria - 15; Metazoa - 5741; Fungi - 5229; Plants - 1611; Viruses - 2; Other Eukaryotes - 2624 (source: NCBI BLink). protein_id AT3G53750.1p transcript_id AT3G53750.1 protein_id AT3G53750.1p transcript_id AT3G53750.1 LOCN Exon COOR W/19915924-19915983,19916122-19916515,19916599-19917212,19917306-19917371 CLON AGAGATCACTGCTTTGG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR W/3859333-3859349 NOTE 1, +0 2 0 0 0 HITS At3g12110[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT3G12110.1 CDS gene_syn ACT11, actin-11 gene ACT11 function Encodes an actin that is expressed predominantly during reproductive development. go_component plasma membrane|GO:0005886|17317660|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_component cytoskeleton|GO:0005856|9037165|ISS go_process response to cyclopentenone|GO:0010583|18334669|IEP go_process actin cytoskeleton organization|GO:0030036||TAS go_function structural constituent of cytoskeleton|GO:0005200|9037165|ISS go_function structural constituent of cytoskeleton|GO:0005200||ISS product actin-11 note actin-11 (ACT11); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cyclopentenone, actin cytoskeleton organization; LOCATED IN: mitochondrion, cytoskeleton, plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 15186 Blast hits to 14782 proteins in 3039 species: Archae - 6; Bacteria - 12; Metazoa - 5717; Fungi - 5233; Plants - 1598; Viruses - 2; Other Eukaryotes - 2618 (source: NCBI BLink). protein_id AT3G12110.1p transcript_id AT3G12110.1 protein_id AT3G12110.1p transcript_id AT3G12110.1 LOCN Exon COOR W/3858116-3858175,3858288-3858681,3858837-3859450,3859544-3859609 CLON AGAGATCACTGCTTTGG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR W/15780947-15780963 NOTE 1, +0 2 0 0 0 HITS At2g37620[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G37620.1 CDS gene_syn AAc1, ACT1, ARABIDOPSIS ACTIN 1, F13M22.12, F13M22_12, actin 1 gene ACT1 function Member of the actin gene family. Expressed in mature pollen. go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component cytoskeleton|GO:0005856||TAS go_process cytoskeleton organization|GO:0007010||TAS go_process developmental growth|GO:0048589|11809837|IMP go_process root hair elongation|GO:0048767|12481103|IMP go_function structural constituent of cytoskeleton|GO:0005200|8597657|ISS go_function structural constituent of cytoskeleton|GO:0005200||ISS product actin 1 note actin 1 (ACT1); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: cytoskeleton organization, root hair elongation, developmental growth; LOCATED IN: cell wall, cytoskeleton, plasma membrane; EXPRESSED IN: ovule, vascular bundle, male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 15230 Blast hits to 14806 proteins in 3046 species: Archae - 8; Bacteria - 15; Metazoa - 5741; Fungi - 5229; Plants - 1611; Viruses - 2; Other Eukaryotes - 2624 (source: NCBI BLink). protein_id AT2G37620.1p transcript_id AT2G37620.1 protein_id AT2G37620.1p transcript_id AT2G37620.1 LOCN Exon COOR W/15779761-15779820,15779957-15780350,15780451-15781064,15781176-15781241 HITS At2g37620[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G37620.2 CDS gene_syn AAc1, ACT1, ARABIDOPSIS ACTIN 1, F13M22.12, F13M22_12, actin 1 gene ACT1 function Member of the actin gene family. Expressed in mature pollen. go_component cell wall|GO:0005618|16287169|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component cytoskeleton|GO:0005856||TAS go_process cytoskeleton organization|GO:0007010||TAS go_process developmental growth|GO:0048589|11809837|IMP go_process root hair elongation|GO:0048767|12481103|IMP go_function structural constituent of cytoskeleton|GO:0005200|8597657|ISS go_function structural constituent of cytoskeleton|GO:0005200||ISS product actin 1 note actin 1 (ACT1); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: cytoskeleton organization, root hair elongation, developmental growth; LOCATED IN: cell wall, cytoskeleton, plasma membrane; EXPRESSED IN: ovule, vascular bundle, male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT2G37620.2p transcript_id AT2G37620.2 protein_id AT2G37620.2p transcript_id AT2G37620.2 LOCN Exon COOR W/15779761-15779820,15779957-15780350,15780451-15781064,15781176-15781241 CLON AGAGATCACTGCTTTGG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR W/16261329-16261345 NOTE 1, +0 2 0 0 0 HITS At5g40605[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G40605.1 mRNA LOCN Exon COOR W/16259229-16264465 HITS At5g40605[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G40605 TE pseudo note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.7e-45 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) LOCN Exon COOR W/16259229-16264465