CLON CATGATCTTCCACA[About SAGE] 
TYPE SAGE Target
CHRO chr5
EVAL 100
COOR W/23153227-23153240

HITS At5g57150[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G57150.1 CDS gene_syn MUL3.10, MUL3_10 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT5G57150.1p transcript_id AT5G57150.1 protein_id AT5G57150.1p transcript_id AT5G57150.1 LOCN Exon COOR W/23152361-23152443,23152526-23152688,23152770-23152991,23153084-23153254,23154768-23154872 HITS At5g57150[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G57150.2 CDS gene_syn MUL3.10, MUL3_10 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT5G57150.2p transcript_id AT5G57150.2 protein_id AT5G57150.2p transcript_id AT5G57150.2 LOCN Exon COOR W/23152361-23152443,23152523-23152688,23152770-23152991,23153084-23153293 HITS At5g57150[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G57150.3 CDS gene_syn MUL3.10, MUL3_10 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT5G57150.3p transcript_id AT5G57150.3 protein_id AT5G57150.3p transcript_id AT5G57150.3 LOCN Exon COOR W/23152361-23152443,23152523-23152688,23152770-23152991,23153084-23153254,23154539-23154556 HITS At5g57150[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G57150.4 CDS gene_syn MUL3.10, MUL3_10 go_component nucleus|GO:0005634||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|12679534|ISS product basic helix-loop-helix (bHLH) DNA-binding superfamily protein note basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.3). protein_id AT5G57150.4p transcript_id AT5G57150.4 protein_id AT5G57150.4p transcript_id AT5G57150.4 LOCN Exon COOR W/23152361-23152443,23152523-23152688,23152770-23152991,23153084-23153254,23154156-23154274,23154768-23154801 CLON CATGATCTTCCACA[About SAGE] TYPE SAGE Target CHRO chr4 EVAL 100 COOR W/13327816-13327829 HITS At4g26350[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G26350.1 CDS gene_syn T25K17.160, T25K17_160 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box/RNI-like/FBD-like domains-containing protein note F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G26340.1); Has 1865 Blast hits to 1805 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 1848; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT4G26350.1p transcript_id AT4G26350.1 protein_id AT4G26350.1p transcript_id AT4G26350.1 LOCN Exon COOR W/13326853-13327719,13327799-13327933,13328022-13328315 CLON CATGATCTTCCACA[About SAGE] TYPE SAGE Target CHRO chr3 EVAL 100 COOR W/5981888-5981901 HITS At3g17470[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT3G17470.1 CDS gene_syn ATCRSH, CRSH, Ca2+-activated RelA/spot homolog gene CRSH go_process guanosine tetraphosphate metabolic process|GO:0015969||IEA go_component chloroplast|GO:0009507|18535838|IDA go_function calcium ion binding|GO:0005509||ISS go_function GTP diphosphokinase activity|GO:0008728|18535838|IGI product Ca2+-activated RelA/spot homolog note Ca2+-activated RelA/spot homolog (CRSH); FUNCTIONS IN: GTP diphosphokinase activity, calcium ion binding; INVOLVED IN: guanosine tetraphosphate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 3 (TAIR:AT1G54130.1); Has 14021 Blast hits to 13962 proteins in 3173 species: Archae - 6; Bacteria - 8120; Metazoa - 1259; Fungi - 992; Plants - 727; Viruses - 0; Other Eukaryotes - 2917 (source: NCBI BLink). protein_id AT3G17470.1p transcript_id AT3G17470.1 protein_id AT3G17470.1p transcript_id AT3G17470.1 LOCN Exon COOR W/5979868-5980248,5980433-5981365,5981437-5981727,5981822-5981968