CODE At4g26400 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr4 TITL AT4G26400.1 CDS gene_syn M3E9.170, M3E9_170 go_component endomembrane system|GO:0012505||IEA go_function zinc ion binding|GO:0008270||IEA go_process response to chitin|GO:0010200|17722694|IEP go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G56340.1); Has 10466 Blast hits to 10426 proteins in 293 species: Archae - 0; Bacteria - 6; Metazoa - 2695; Fungi - 997; Plants - 5209; Viruses - 70; Other Eukaryotes - 1489 (source: NCBI BLink). protein_id AT4G26400.1p transcript_id AT4G26400.1 protein_id AT4G26400.1p transcript_id AT4G26400.1 COOR C/13344953-13346023 HITS GATCACACATTTTTGTA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR C/13344639-13344655 NOTE 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 HITS BX826830 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13344807-13346069,13346390-13346589 HITS Z34755 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/13344809-13345201 HITS BP571595 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/13344814-13345277 NOTE BP575669 BP577419 BP842498 AV543194 HITS RAFL23-14-L08 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 98.75 LOCN Exon COOR C/13344814-13346067,13346405-13346569 HITS GATCATTTGGGTTTCCG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR C/13344815-13344831 NOTE 22 49 40 15 16 8 4 0 5 0 4 0 0 17 0 0 15 HITS BP656458 [GenBank] TYPE ESTs EVAL e-179 LOCN Exon COOR W/13344844-13345288 NOTE BP636574 EL067436 HITS BX826687 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13344846-13346069,13346390-13346519 HITS BP576081 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/13344847-13345309 NOTE BP576380 BP582345 BP584946 AV817611 BP633409 BP671070 ES111422 HITS RAFL09-95-B11 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL 2e-78 LOCN Exon COOR C/13344848-13344903,13345101-13345255 HITS R25506 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 100.00 LOCN Exon COOR C/13344848-13346067,13346388-13346525 NOTE AY099807 HITS U25506 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP Gateway Clone EVAL 100.00 LOCN Exon COOR C/13344863-13346023 NOTE U25506 BT000305 pENTR-TOPO HITS BP625983 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/13344870-13345312 NOTE Z33838 ES043630 ES202281 EL081263 EL007319 EL008168 EH986577 HITS BX826403 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13344885-13346069,13346390-13346547 HITS BX828858 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13344890-13346069,13346390-13346585 HITS BX828879 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13344893-13346069,13346389-13346529 HITS BX828235 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13344899-13346067,13346405-13346553 HITS BX827694 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13344901-13346069,13346390-13346529 HITS 253958_at [gAtlas] TYPE Affy Probes EVAL 0.0 LOCN Exon COOR C/13344959-13345473 HITS GATCAACGTAAGTAATG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/13345096-13345112 NOTE 56 22 32 9 23 5 0 10 2 3 0 0 0 20 0 0 0 HITS EL138208 [GenBank] TYPE ESTs EVAL 1e-51 LOCN Exon COOR W/13345239-13345340 HITS BX839761 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/13345251-13346069,13346390-13346524 NOTE BU635070 HITS BX839761 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13345290-13346069,13346390-13346524 HITS GATCCAGTTTAGACCAT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/13345412-13345428 NOTE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 HITS BU636688 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/13345499-13346069,13346391-13346545 NOTE AV831733 DR273475 ES055438 ES069493 BP849575 HITS GATCCGAGCTCTCATAC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/13345528-13345544 NOTE 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 HITS DR363963 [GenBank] TYPE ESTs EVAL e-159 LOCN Exon COOR C/13345783-13346069,13346390-13346549 NOTE DR273474 BP798383 HITS BP800294 [GenBank] TYPE ESTs EVAL e-134 LOCN Exon COOR C/13345826-13346067,13346405-13346568 NOTE EH881978 BP801186 BP857017 BP797606 BP864828 BP802263 N65737 BE530862 HITS GATCTCGGCACCAATAA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/13345958-13345974 NOTE 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 0 0 HITS BP796455 [GenBank] TYPE ESTs EVAL e-113 LOCN Exon COOR C/13345984-13346067,13346387-13346597 NOTE BE529500 BE525957 ES140374 DR273473 DR363962 HITS GATCTCCACGAAGATAA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 1000-Promotor COOR W/13346448-13346464 NOTE 0 0 7 2 0 0 0 0 0 0 0 0 0 0 0 0 0 HITS DR271169 [GenBank] TYPE ESTs EVAL 0.0 LOCN 1000-Promotor COOR W/13346654-13347003,13347496-13347561,13347778-13347847 NOTE DR271170 EL305004 HITS DR271171 [GenBank] TYPE ESTs EVAL e-150 LOCN 1000-Promotor COOR W/13346735-13347003,13347496-13347558,13347775-13347856,13347989-13348038,13348151-13348290,13348378-13348410 NOTE DR271164 DR271175 EG509787 EG512791 EG512792 ES057362 ES138497 DR271166 DR271172 DR271173 EH812299 EH979523 EH990881 EL174704 EL235523 AU236328 DR271163 DR271174 DR305903 DR305904 DR271165 EH952899 DR271168 EL265609 DR271167 AV553027 EH875507 DR271176 EH834895 EL304825 EL037305 EH899940 EL212154 EH895770 HITS RAFL14-88-M12 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 98.85 LOCN 1000-Promotor COOR W/13346748-13347002,13347495-13347561,13347778-13347855,13347988-13348040,13348153-13348289,13348377-13348441,13348557-13348615,13348702-13348947,13348943-13349019 HITS R20312 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 98.85 LOCN 1000-Promotor COOR W/13346748-13347002,13347495-13347561,13347778-13347855,13347988-13348040,13348153-13348289,13348377-13348441,13348557-13348615,13348702-13348947,13348943-13349019 NOTE BT002964 HITS BX829198 [GenBank] [Order] TYPE GSLT cDNA EVAL e-136 LOCN 1000-Promotor COOR W/13346758-13347003,13347496-13347558,13347775-13347856,13347989-13348038,13348151-13348290,13348378-13348441,13348557-13348615,13348702-13348961 HITS U20312 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP pUni Clone EVAL 99.15 LOCN 1000-Promotor COOR W/13346760-13347002,13347495-13347561,13347778-13347855,13347988-13348040,13348153-13348289,13348377-13348441,13348557-13348615,13348702-13348815 NOTE BT004440 HITS BX827785 [GenBank] [Order] TYPE GSLT cDNA EVAL e-157 LOCN 1000-Promotor COOR W/13346764-13347003,13347496-13347558,13347775-13347856,13347989-13348038,13348151-13348290,13348378-13348441,13348557-13348615,13348702-13348986 HITS GATCGCTGTATGCTCCA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 1000-Promotor COOR C/13346836-13346852 NOTE 0 0 5 0 0 0 0 0 0 1 0 0 0 4 2 0 0 HITS GATCGGAGTGGTTGAAT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 1000-Promotor COOR W/13346849-13346865 NOTE 0 0 0 0 0 1 0 0 0 0 0 0 0 0 24 0 0 HITS 253959_at [gAtlas] TYPE Affy Probes EVAL e-110 LOCN 1000-Promotor COOR W/13346963-13346999,13347492-13347558,13347775-13347853,13348089-13348290,13348378-13348441,13348557-13348615,13348702-13348791 CODE At4g26400 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr4 TITL AT4G26400.2 CDS gene_syn M3E9.170, M3E9_170 go_component endomembrane system|GO:0012505||IEA go_function zinc ion binding|GO:0008270||IEA go_process response to chitin|GO:0010200|17722694|IEP go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G56340.1); Has 10466 Blast hits to 10426 proteins in 293 species: Archae - 0; Bacteria - 6; Metazoa - 2695; Fungi - 997; Plants - 5209; Viruses - 70; Other Eukaryotes - 1489 (source: NCBI BLink). protein_id AT4G26400.2p transcript_id AT4G26400.2 protein_id AT4G26400.2p transcript_id AT4G26400.2 COOR C/13344953-13346023 HITS GATCACACATTTTTGTA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR C/13344639-13344655 NOTE 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 HITS BX826830 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13344807-13346069,13346390-13346589 HITS Z34755 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/13344809-13345201 HITS BP571595 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/13344814-13345277 NOTE BP575669 BP577419 BP842498 AV543194 HITS RAFL23-14-L08 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 98.75 LOCN Exon COOR C/13344814-13346067,13346405-13346569 HITS GATCATTTGGGTTTCCG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR C/13344815-13344831 NOTE 22 49 40 15 16 8 4 0 5 0 4 0 0 17 0 0 15 HITS BP656458 [GenBank] TYPE ESTs EVAL e-179 LOCN Exon COOR W/13344844-13345288 NOTE BP636574 EL067436 HITS BX826687 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13344846-13346069,13346390-13346519 HITS BP576081 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/13344847-13345309 NOTE BP576380 BP582345 BP584946 AV817611 BP633409 BP671070 ES111422 HITS RAFL09-95-B11 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL 2e-78 LOCN Exon COOR C/13344848-13344903,13345101-13345255 HITS R25506 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 100.00 LOCN Exon COOR C/13344848-13346067,13346388-13346525 NOTE AY099807 HITS U25506 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP Gateway Clone EVAL 100.00 LOCN Exon COOR C/13344863-13346023 NOTE U25506 BT000305 pENTR-TOPO HITS BP625983 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/13344870-13345312 NOTE Z33838 ES043630 ES202281 EL081263 EL007319 EL008168 EH986577 HITS BX826403 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13344885-13346069,13346390-13346547 HITS BX828858 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13344890-13346069,13346390-13346585 HITS BX828879 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13344893-13346069,13346389-13346529 HITS BX828235 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13344899-13346067,13346405-13346553 HITS BX827694 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13344901-13346069,13346390-13346529 HITS 253958_at [gAtlas] TYPE Affy Probes EVAL 0.0 LOCN Exon COOR C/13344959-13345473 HITS GATCAACGTAAGTAATG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/13345096-13345112 NOTE 56 22 32 9 23 5 0 10 2 3 0 0 0 20 0 0 0 HITS EL138208 [GenBank] TYPE ESTs EVAL 1e-51 LOCN Exon COOR W/13345239-13345340 HITS BX839761 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/13345251-13346069,13346390-13346524 NOTE BU635070 HITS BX839761 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13345290-13346069,13346390-13346524 HITS GATCCAGTTTAGACCAT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/13345412-13345428 NOTE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 HITS BU636688 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/13345499-13346069,13346391-13346545 NOTE AV831733 DR273475 ES055438 ES069493 BP849575 HITS GATCCGAGCTCTCATAC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/13345528-13345544 NOTE 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 HITS DR363963 [GenBank] TYPE ESTs EVAL e-159 LOCN Exon COOR C/13345783-13346069,13346390-13346549 NOTE DR273474 BP798383 HITS BP800294 [GenBank] TYPE ESTs EVAL e-134 LOCN Exon COOR C/13345826-13346067,13346405-13346568 NOTE EH881978 BP801186 BP857017 BP797606 BP864828 BP802263 N65737 BE530862 HITS GATCTCGGCACCAATAA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/13345958-13345974 NOTE 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 0 0 HITS BP796455 [GenBank] TYPE ESTs EVAL e-113 LOCN Exon COOR C/13345984-13346067,13346387-13346597 NOTE BE529500 BE525957 ES140374 DR273473 DR363962 HITS GATCTCCACGAAGATAA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 1000-Promotor COOR W/13346448-13346464 NOTE 0 0 7 2 0 0 0 0 0 0 0 0 0 0 0 0 0 HITS DR271169 [GenBank] TYPE ESTs EVAL 0.0 LOCN 1000-Promotor COOR W/13346654-13347003,13347496-13347561,13347778-13347847 NOTE DR271170 EL305004 HITS DR271171 [GenBank] TYPE ESTs EVAL e-150 LOCN 1000-Promotor COOR W/13346735-13347003,13347496-13347558,13347775-13347856,13347989-13348038,13348151-13348290,13348378-13348410 NOTE DR271164 DR271175 EG509787 EG512791 EG512792 ES057362 ES138497 DR271166 DR271172 DR271173 EH812299 EH979523 EH990881 EL174704 EL235523 AU236328 DR271163 DR271174 DR305903 DR305904 DR271165 EH952899 DR271168 EL265609 DR271167 AV553027 EH875507 DR271176 EH834895 EL304825 EL037305 EH899940 EL212154 EH895770 HITS RAFL14-88-M12 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 98.85 LOCN 1000-Promotor COOR W/13346748-13347002,13347495-13347561,13347778-13347855,13347988-13348040,13348153-13348289,13348377-13348441,13348557-13348615,13348702-13348947,13348943-13349019 HITS R20312 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 98.85 LOCN 1000-Promotor COOR W/13346748-13347002,13347495-13347561,13347778-13347855,13347988-13348040,13348153-13348289,13348377-13348441,13348557-13348615,13348702-13348947,13348943-13349019 NOTE BT002964 HITS BX829198 [GenBank] [Order] TYPE GSLT cDNA EVAL e-136 LOCN 1000-Promotor COOR W/13346758-13347003,13347496-13347558,13347775-13347856,13347989-13348038,13348151-13348290,13348378-13348441,13348557-13348615,13348702-13348961 HITS U20312 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP pUni Clone EVAL 99.15 LOCN 1000-Promotor COOR W/13346760-13347002,13347495-13347561,13347778-13347855,13347988-13348040,13348153-13348289,13348377-13348441,13348557-13348615,13348702-13348815 NOTE BT004440 HITS BX827785 [GenBank] [Order] TYPE GSLT cDNA EVAL e-157 LOCN 1000-Promotor COOR W/13346764-13347003,13347496-13347558,13347775-13347856,13347989-13348038,13348151-13348290,13348378-13348441,13348557-13348615,13348702-13348986 HITS GATCGCTGTATGCTCCA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 1000-Promotor COOR C/13346836-13346852 NOTE 0 0 5 0 0 0 0 0 0 1 0 0 0 4 2 0 0 HITS GATCGGAGTGGTTGAAT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 1000-Promotor COOR W/13346849-13346865 NOTE 0 0 0 0 0 1 0 0 0 0 0 0 0 0 24 0 0 HITS 253959_at [gAtlas] TYPE Affy Probes EVAL e-110 LOCN 1000-Promotor COOR W/13346963-13346999,13347492-13347558,13347775-13347853,13348089-13348290,13348378-13348441,13348557-13348615,13348702-13348791