CODE At4g26370 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr4 TITL AT4G26370.1 CDS gene_syn T25K17.4 go_component chloroplast|GO:0009507|18431481|IDA go_process regulation of transcription, DNA-dependent|GO:0006355||IEA go_function RNA binding|GO:0003723||IEA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function RNA binding|GO:0003723||ISS product antitermination NusB domain-containing protein note antitermination NusB domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NusB/RsmB/TIM44 (InterPro:IPR006027); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G26370.1p transcript_id AT4G26370.1 protein_id AT4G26370.1p transcript_id AT4G26370.1 COOR C/13334099-13334236,13334338-13334436,13334707-13334794,13334887-13334941,13335079-13335213,13335379-13335455,13335840-13336153 HITS BX826416 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/13333775-13334438,13334709-13334792,13334885-13335215,13335381-13335455,13335839-13336175 HITS RAFL11-01-P12 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-104 LOCN Exon COOR C/13333960-13334170 HITS GATCAACACTTTGCCTA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR W/13334012-13334028 NOTE 0 0 0 0 0 0 4 0 0 0 0 0 0 2 2 0 0 HITS U15347 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP pUni Clone EVAL 100.00 LOCN Exon COOR C/13334099-13334236,13334338-13334436,13334707-13334794,13334887-13334941,13335079-13335213,13335379-13335455,13335840-13336153 NOTE BT008707 HITS G15347 Invitrogen/Salk Gateway clone, originally SSP/Salk pUNI clone. [pENTR223 Seq] [pENTR223 Map] [Orignal SSP/SALK U] [Order from ABRC] TYPE GateWay Clone EVAL 100.00 LOCN Exon COOR C/13334099-13334236,13334338-13334436,13334707-13334794,13334887-13334941,13335079-13335213,13335379-13335455,13335840-13336153 NOTE U15347 BT008707 pENTR_Sfi HITS GATCAGCACCACGCATA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/13334189-13334205 NOTE 0 0 0 0 0 0 1 0 0 0 3 0 0 0 5 0 0 HITS 254011_at [gAtlas] TYPE Affy Probes EVAL 7e-72 LOCN Exon COOR C/13334192-13334235,13334337-13334438,13334709-13334795,13334888-13334941,13335079-13335215,13335381-13335441 HITS GATCTTGCAAAACGGTT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/13334214-13334230 NOTE 0 0 0 0 0 4 0 0 0 0 0 0 0 0 2 0 0 HITS EL135975 [GenBank] TYPE ESTs EVAL 3e-30 LOCN Exon COOR C/13334373-13334438,13334709-13334743 HITS EL005016 [GenBank] TYPE ESTs EVAL 7e-22 LOCN Exon COOR C/13334387-13334436,13334707-13334758 HITS DR352256 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/13334884-13334941,13335079-13335215,13335381-13335450,13335835-13336222 NOTE ES001627 DR352249 AV832068 CB262865 EL002509 DR352253 DR352246 DR352266 DR352267 DR352252 DR352247 DR352245 DR352248 DR352250 DR352258 DR352259 DR352260 DR352264 DR352265 HITS DR352255 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/13335388-13335448,13335835-13336230 NOTE DR352254 DR352257 DR352262 DR352268 BP851576 DR352251 BP818224 DR352263 BP868833 DR275787 ES085326 DR352261 ES064762 HITS ASRP204155 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN 300-UTR5 COOR C/13336335-13336358 HITS ASRP90133 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN 1000-Promotor COOR W/13336662-13336694 HITS GAGCGTTAACAGTGGTA [About MPSS sRNA] TYPE MPSS sRNA Contig EVAL 100.00 LOCN 1000-Promotor COOR C/13336671-13336687 NOTE 1, +0 0 0 16 10 HITS AACGCTCGTTAATTCGG [About MPSS sRNA] TYPE MPSS sRNA Contig EVAL 100.00 LOCN 1000-Promotor COOR W/13336681-13336697 NOTE 1, +0 3 0 0 0 HITS ASRP56667 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN 1000-Promotor COOR C/13336689-13336712 HITS ASRP20898 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN 1000-Promotor COOR C/13336767-13336799 CODE At4g26370 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr4 TITL AT4G26370.2 CDS gene_syn T25K17.4 go_component chloroplast|GO:0009507|18431481|IDA go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_function RNA binding|GO:0003723||ISS product antitermination NusB domain-containing protein note antitermination NusB domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT4G26370.2p transcript_id AT4G26370.2 protein_id AT4G26370.2p transcript_id AT4G26370.2 COOR C/13334766-13334794,13334887-13335213,13335379-13335455,13335840-13336153 HITS EL135975 [GenBank] TYPE ESTs EVAL 3e-30 LOCN 300-UTR3 COOR C/13334373-13334438,13334709-13334743 HITS EL005016 [GenBank] TYPE ESTs EVAL 7e-22 LOCN 300-UTR3 COOR C/13334387-13334436,13334707-13334758 HITS DR352256 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/13334884-13334941,13335079-13335215,13335381-13335450,13335835-13336222 NOTE ES001627 DR352249 AV832068 CB262865 EL002509 DR352253 DR352246 DR352266 DR352267 DR352252 DR352247 DR352245 DR352248 DR352250 DR352258 DR352259 DR352260 DR352264 DR352265 HITS DR352255 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/13335388-13335448,13335835-13336230 NOTE DR352254 DR352257 DR352262 DR352268 BP851576 DR352251 BP818224 DR352263 BP868833 DR275787 ES085326 DR352261 ES064762 HITS ASRP204155 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN 300-UTR5 COOR C/13336335-13336358 HITS ASRP90133 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN 1000-Promotor COOR W/13336662-13336694 HITS GAGCGTTAACAGTGGTA [About MPSS sRNA] TYPE MPSS sRNA Contig EVAL 100.00 LOCN 1000-Promotor COOR C/13336671-13336687 NOTE 1, +0 0 0 16 10 HITS AACGCTCGTTAATTCGG [About MPSS sRNA] TYPE MPSS sRNA Contig EVAL 100.00 LOCN 1000-Promotor COOR W/13336681-13336697 NOTE 1, +0 3 0 0 0 HITS ASRP56667 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN 1000-Promotor COOR C/13336689-13336712 HITS ASRP20898 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN 1000-Promotor COOR C/13336767-13336799