CLON GTAATTACATAGGTATG[About MPSS sRNA] 
TYPE MPSS sRNA Contig
CHRO chr5
EVAL 100.00
COOR C/9964947-9964963
NOTE 1, +0 0 6 17 13


CLON GTAATTACATAGGTATG[About MPSS sRNA] 
TYPE MPSS sRNA Contig
CHRO chr5
EVAL 100.00
COOR W/9612646-9612662
NOTE 1, +0 0 6 17 13


CLON GTAATTACATAGGTATG[About MPSS sRNA] 
TYPE MPSS sRNA Contig
CHRO chr5
EVAL 100.00
COOR W/9590464-9590480
NOTE 1, +0 0 6 17 13


CLON GTAATTACATAGGTATG[About MPSS sRNA] 
TYPE MPSS sRNA Contig
CHRO chr5
EVAL 100.00
COOR C/9559437-9559453
NOTE 1, +0 0 6 17 13


CLON GTAATTACATAGGTATG[About MPSS sRNA] 
TYPE MPSS sRNA Contig
CHRO chr5
EVAL 100.00
COOR C/8746631-8746647
NOTE 1, +0 0 6 17 13

HITS At5g25240[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G25240.1 CDS gene_syn F21J6.107, F21J6_107 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). protein_id AT5G25240.1p transcript_id AT5G25240.1 protein_id AT5G25240.1p transcript_id AT5G25240.1 LOCN 300-UTR3 COOR C/8746779-8747174 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR W/7711185-7711201 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/5429992-5430008 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/5129765-5129781 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR W/4312490-4312506 NOTE 1, +0 0 6 17 13 HITS At5g13450[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G13450.1 CDS gene_syn ATP5, delta subunit of Mt ATP synthase gene ATP5 go_component mitochondrion|GO:0005739|15276431|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_process ATP synthesis coupled proton transport|GO:0015986||IEA go_component mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)|GO:0000275||ISS go_component mitochondrion|GO:0005739|11743114|IDA go_component mitochondrion|GO:0005739|11743115|IDA go_component mitochondrion|GO:0005739|12681508|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_function zinc ion binding|GO:0008270|20018591|IDA go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||ISS go_function cobalt ion binding|GO:0050897|20018591|IDA product delta subunit of Mt ATP synthase note delta subunit of Mt ATP synthase (ATP5); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, cobalt ion binding, zinc ion binding; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). protein_id AT5G13450.1p transcript_id AT5G13450.1 protein_id AT5G13450.1p transcript_id AT5G13450.1 LOCN 1000-Promotor COOR C/4310558-4310686,4310784-4310870,4310952-4311064,4311156-4311399,4311557-4311604,4311846-4311941 HITS At5g13450[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G13450.2 CDS gene_syn ATP5, delta subunit of Mt ATP synthase gene ATP5 go_component plasma membrane|GO:0005886|17317660|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_process ATP synthesis coupled proton transport|GO:0015986||IEA go_component mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)|GO:0000275||ISS go_component mitochondrion|GO:0005739|11743114|IDA go_component mitochondrion|GO:0005739|11743115|IDA go_component mitochondrion|GO:0005739|12681508|IDA go_component mitochondrion|GO:0005739|14671022|IDA go_function zinc ion binding|GO:0008270|20018591|IDA go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||ISS go_function cobalt ion binding|GO:0050897|20018591|IDA product delta subunit of Mt ATP synthase note delta subunit of Mt ATP synthase (ATP5); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, cobalt ion binding, zinc ion binding; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); Has 5632 Blast hits to 5632 proteins in 1944 species: Archae - 0; Bacteria - 3697; Metazoa - 218; Fungi - 134; Plants - 154; Viruses - 0; Other Eukaryotes - 1429 (source: NCBI BLink). protein_id AT5G13450.2p transcript_id AT5G13450.2 protein_id AT5G13450.2p transcript_id AT5G13450.2 LOCN 1000-Promotor COOR C/4310558-4310686,4310784-4310870,4310952-4311064,4311156-4311255,4311557-4311604,4311846-4311941 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/3020126-3020142 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR W/354194-354210 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr4 EVAL 100.00 COOR C/16865000-16865016 NOTE 1, +0 0 6 17 13 HITS At4g35519[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G35519.1 CDS go_component mitochondrion|GO:0005739||IEA product unknown protein note unknown protein; LOCATED IN: mitochondrion; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT4G35519.1p transcript_id AT4G35519.1 protein_id AT4G35519.1p transcript_id AT4G35519.1 LOCN 300-UTR3 COOR C/16865248-16865370 HITS At4g35520[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G35520.1 CDS gene_syn ATMLH3, F8D20.30, F8D20_30, MLH3, MUTL protein homolog 3 gene MLH3 function DNA mismatch repair protein similar to MutL. Required for normal levels of meiotic crossovers go_function ATP binding|GO:0005524||IEA go_function mismatched DNA binding|GO:0030983||IEA go_component chromosome|GO:0005694|16467846|IDA go_process mismatch repair|GO:0006298||ISS go_process reciprocal meiotic recombination|GO:0007131|16467846|IMP go_function ATP binding|GO:0005524||ISS product MUTL protein homolog 3 note MUTL protein homolog 3 (MLH3); FUNCTIONS IN: mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, reciprocal meiotic recombination; LOCATED IN: chromosome; EXPRESSED IN: inflorescence; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein, N-terminal (InterPro:IPR014763), MutL, C-terminal, dimerisation (InterPro:IPR014790), DNA mismatch repair protein (InterPro:IPR002099), DNA mismatch repair, conserved site (InterPro:IPR014762), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: DNA mismatch repair protein, putative (TAIR:AT4G02460.1); Has 8909 Blast hits to 6784 proteins in 2360 species: Archae - 138; Bacteria - 6148; Metazoa - 581; Fungi - 681; Plants - 158; Viruses - 0; Other Eukaryotes - 1203 (source: NCBI BLink). protein_id AT4G35520.1p transcript_id AT4G35520.1 protein_id AT4G35520.1p transcript_id AT4G35520.1 LOCN 1000-Promotor COOR W/16865488-16865613,16865694-16865745,16865835-16865882,16865964-16866118,16866208-16866265,16866441-16866498,16866611-16866703,16866770-16866898,16867221-16867377,16867457-16867526,16867607-16867687,16867783-16869120,16869228-16869422,16869648-16869721,16869823-16870023,16870179-16870223,16870330-16870383,16870460-16870608,16870728-16870776,16870879-16870938,16871021-16871093,16871208-16871293,16871369-16871527 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr4 EVAL 100.00 COOR W/11360924-11360940 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr4 EVAL 100.00 COOR W/9438839-9438855 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr4 EVAL 100.00 COOR W/8063631-8063647 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr4 EVAL 100.00 COOR C/7853463-7853479 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr4 EVAL 100.00 COOR W/6178501-6178517 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr4 EVAL 100.00 COOR W/5354530-5354546 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr4 EVAL 100.00 COOR W/5354168-5354184 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr4 EVAL 100.00 COOR C/2621938-2621954 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr4 EVAL 100.00 COOR C/1001937-1001953 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr4 EVAL 100.00 COOR C/314199-314215 NOTE 1, +0 0 6 17 13 HITS At4g00750[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT4G00750.1 CDS gene_syn F15P23.1, F15P23_1 go_component Golgi apparatus|GO:0005794|16618929|IDA go_process biological_process|GO:0008150||ND product S-adenosyl-L-methionine-dependent methyltransferases superfamily protein note S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT2G45750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). protein_id AT4G00750.1p transcript_id AT4G00750.1 protein_id AT4G00750.1p transcript_id AT4G00750.1 LOCN 300-UTR5 COOR W/314405-315085,316016-316226,316318-316615,316711-317109,317195-317507 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR C/20485070-20485086 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR C/17397230-17397246 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR C/17144420-17144436 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR W/16879805-16879821 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR W/16561708-16561724 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR W/15937340-15937356 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR W/11535898-11535914 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR C/10821376-10821392 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR W/10392146-10392162 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR W/9890104-9890120 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR C/9559613-9559629 NOTE 1, +0 0 6 17 13 HITS At3g26140[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT3G26140.1 CDS go_process carbohydrate metabolic process|GO:0005975||IEA go_function catalytic activity|GO:0003824||IEA go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA go_function cation binding|GO:0043169||IEA go_component cellular_component|GO:0005575||ND go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS product Cellulase (glycosyl hydrolase family 5) protein note Cellulase (glycosyl hydrolase family 5) protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Ricin B lectin (InterPro:IPR000772), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Cellulase (glycosyl hydrolase family 5) protein (TAIR:AT1G13130.1); Has 359 Blast hits to 351 proteins in 117 species: Archae - 8; Bacteria - 143; Metazoa - 0; Fungi - 82; Plants - 110; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). protein_id AT3G26140.1p transcript_id AT3G26140.1 protein_id AT3G26140.1p transcript_id AT3G26140.1 LOCN 300-UTR3 COOR C/9559742-9560166,9560486-9561003,9561883-9562130,9562735-9563070 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR C/7996566-7996582 NOTE 1, +0 0 6 17 13 HITS At3g22555[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT3G22555.1 pseudogene LOCN Exon COOR W/7995486-7996636 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR C/2629957-2629973 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/19196687-19196703 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/17255163-17255179 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/13908651-13908667 NOTE 1, +0 0 6 17 13 HITS At2g32795[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G32795.1 ncRNA function Unknown gene go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT2G32795.1 LOCN 1000-Promotor COOR W/13909423-13909864,13910690-13910910 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/13338007-13338023 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR W/12801048-12801064 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/12555235-12555251 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/11399307-11399323 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/11287091-11287107 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/7154666-7154682 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/6925307-6925323 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/6101306-6101322 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR W/6099584-6099600 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR W/6084144-6084160 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/5843905-5843921 NOTE 1, +0 0 6 17 13 HITS At2g13920[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G13920.1 pseudogene LOCN 300-UTR5 COOR W/5844029-5845726 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/5466934-5466950 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/1460855-1460871 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/30253037-30253053 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/26171410-26171426 NOTE 1, +0 0 6 17 13 HITS At1g69580[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G69580.1 CDS gene_syn F24J1.30, F24J1_30 go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product Homeodomain-like superfamily protein note Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04030.3); Has 1694 Blast hits to 1678 proteins in 70 species: Archae - 0; Bacteria - 6; Metazoa - 10; Fungi - 0; Plants - 1653; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). protein_id AT1G69580.1p transcript_id AT1G69580.1 protein_id AT1G69580.1p transcript_id AT1G69580.1 LOCN 1000-Promotor COOR W/26172127-26172301,26172392-26172468,26172558-26172606,26172735-26172834,26172917-26172986,26173073-26173612 HITS At1g69580[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G69580.2 CDS gene_syn F24J1.30, F24J1_30 go_process regulation of transcription|GO:0045449|11118137|TAS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product Homeodomain-like superfamily protein note Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04030.3); Has 1687 Blast hits to 1671 proteins in 68 species: Archae - 0; Bacteria - 6; Metazoa - 4; Fungi - 0; Plants - 1652; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). protein_id AT1G69580.2p transcript_id AT1G69580.2 protein_id AT1G69580.2p transcript_id AT1G69580.2 LOCN 1000-Promotor COOR W/26172127-26172301,26172392-26172468,26172558-26172606,26172735-26172834,26172914-26172986,26173073-26173612 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/25963187-25963203 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/23554369-23554385 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/22993991-22994007 NOTE 1, +0 0 6 17 13 HITS At1g62240[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G62240.1 CDS gene_syn F19K23.23, F19K23_23 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 186248 Blast hits to 53970 proteins in 2688 species: Archae - 469; Bacteria - 57770; Metazoa - 55630; Fungi - 12355; Plants - 17666; Viruses - 2624; Other Eukaryotes - 39734 (source: NCBI BLink). protein_id AT1G62240.1p transcript_id AT1G62240.1 protein_id AT1G62240.1p transcript_id AT1G62240.1 LOCN 1000-Promotor COOR W/22994640-22995323 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/22622235-22622251 NOTE 1, +0 0 6 17 13 HITS At1g61330[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G61330.1 CDS gene_syn T1F9.18, T1F9_18 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product FBD, F-box and Leucine Rich Repeat domains containing protein note FBD, F-box and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: FBD / Leucine Rich Repeat domains containing protein (TAIR:AT1G61320.1); Has 1015 Blast hits to 1010 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1009; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G61330.1p transcript_id AT1G61330.1 protein_id AT1G61330.1p transcript_id AT1G61330.1 LOCN 1000-Promotor COOR W/22622975-22623850,22623977-22624141,22624225-22624527 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/19995664-19995680 NOTE 1, +0 0 6 17 13 HITS At1g53590[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G53590.1 CDS gene_syn F22G10.28, NTMC2T6.1, NTMC2TYPE6.1 gene NTMC2T6.1 go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17317660|IDA product Calcium-dependent lipid-binding (CaLB domain) family protein note NTMC2T6.1; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G14590.2); Has 5916 Blast hits to 4916 proteins in 346 species: Archae - 2; Bacteria - 105; Metazoa - 3154; Fungi - 722; Plants - 1160; Viruses - 7; Other Eukaryotes - 766 (source: NCBI BLink). protein_id AT1G53590.1p transcript_id AT1G53590.1 protein_id AT1G53590.1p transcript_id AT1G53590.1 LOCN 1000-Promotor COOR W/19996556-19996672,19996762-19996836,19997204-19997347,19997446-19997541,19997628-19997759,19997837-19997989,19998104-19998145,19998278-19998326,19998446-19998538,19998614-19998797,19998881-19999004,19999081-20000127 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/19085153-19085169 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/19062019-19062035 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/18790981-18790997 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/18746978-18746994 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/17899917-17899933 NOTE 1, +0 0 6 17 13 HITS At1g48422[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G48422.1 pseudogene LOCN Intron COOR C/17899422-17899711,17900651-17900707 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/17552928-17552944 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/16807044-16807060 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/15939377-15939393 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/14299773-14299789 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/13262132-13262148 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/13058877-13058893 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/12855923-12855939 NOTE 1, +0 0 6 17 13 HITS At1g35143[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G35143.1 mRNA LOCN 1000-Promotor COOR C/12855008-12855133 HITS At1g35143[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G35143 TE pseudo gene_syn T32G9.43, T32G9_43 note Transposable element gene, similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT1G52950.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G64410.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340) LOCN 1000-Promotor COOR C/12855008-12855133 HITS At1g35146[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G35146.1 mRNA LOCN 300-UTR3 COOR C/12856198-12860244 HITS At1g35146[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G35146 TE pseudo gene_syn T32G9.42 note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.9e-33 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) LOCN 300-UTR3 COOR C/12856198-12860244 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/12564011-12564027 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/12364189-12364205 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/12329983-12329999 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/11737323-11737339 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/9867344-9867360 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/9816264-9816280 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/8291501-8291517 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/8114824-8114840 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/7035245-7035261 NOTE 1, +0 0 6 17 13 HITS At1g20320[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G20320.1 CDS gene_syn F14O10.8, F14O10_8 go_component nucleus|GO:0005634||IEA go_function phosphoprotein phosphatase activity|GO:0004721||IEA go_process biological_process|GO:0008150||ND product Haloacid dehalogenase-like hydrolase (HAD) superfamily protein note Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: phosphoprotein phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase, phosphatase domain (InterPro:IPR011947), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G54210.1); Has 1363 Blast hits to 1358 proteins in 225 species: Archae - 0; Bacteria - 2; Metazoa - 285; Fungi - 300; Plants - 331; Viruses - 0; Other Eukaryotes - 445 (source: NCBI BLink). protein_id AT1G20320.1p transcript_id AT1G20320.1 protein_id AT1G20320.1p transcript_id AT1G20320.1 LOCN 1000-Promotor COOR C/7033846-7034874 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/6735919-6735935 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/3910531-3910547 NOTE 1, +0 0 6 17 13 HITS At1g11620[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G11620.1 CDS gene_syn F25C20.23, F25C20_23 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box and associated interaction domains-containing protein note F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT1G31510.1); Has 2174 Blast hits to 2137 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2172; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_id AT1G11620.1p transcript_id AT1G11620.1 protein_id AT1G11620.1p transcript_id AT1G11620.1 LOCN 300-UTR5 COOR W/3910833-3911924 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/501304-501320 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/17283-17299 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR W/17063-17079 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR W/11025390-11025406 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/14082765-14082781 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/14761113-14761129 NOTE 1, +0 0 6 17 13 HITS At5g37280[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G37280.1 CDS gene_syn MNJ8.7, MNJ8_7 go_function zinc ion binding|GO:0008270||IEA go_function zinc ion binding|GO:0008270||ISS product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G37200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). protein_id AT5G37280.1p transcript_id AT5G37280.1 protein_id AT5G37280.1p transcript_id AT5G37280.1 LOCN 300-UTR3 COOR C/14761275-14761925 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/15342625-15342641 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/15606531-15606547 NOTE 1, +0 0 6 17 13 HITS At5g38980[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G38980.1 CDS gene_syn K15E6.160, K15E6_160 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT5G38980.1p transcript_id AT5G38980.1 protein_id AT5G38980.1p transcript_id AT5G38980.1 LOCN 300-UTR5 COOR W/15606827-15607105 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR W/17365079-17365095 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/17618615-17618631 NOTE 1, +0 0 6 17 13 HITS At5g43820[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G43820.1 CDS gene_syn MQD19.18, MQD19_18 go_process biological_process|GO:0008150||ND product Pentatricopeptide repeat (PPR) superfamily protein note Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G15010.1); Has 33976 Blast hits to 11353 proteins in 260 species: Archae - 0; Bacteria - 8; Metazoa - 169; Fungi - 383; Plants - 32575; Viruses - 0; Other Eukaryotes - 841 (source: NCBI BLink). protein_id AT5G43820.1p transcript_id AT5G43820.1 protein_id AT5G43820.1p transcript_id AT5G43820.1 LOCN 1000-Promotor COOR W/17618948-17620588 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR W/17775783-17775799 NOTE 1, +0 0 6 17 13 HITS At5g44160[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G44160.1 CDS gene_syn MLN1.8, MLN1_8, NUC, nutcracker gene NUC go_component intracellular|GO:0005622||IEA go_process regulation of transcription|GO:0045449|11118137|TAS go_function nucleic acid binding|GO:0003676||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function zinc ion binding|GO:0008270||ISS product C2H2-like zinc finger protein note nutcracker (NUC); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: primary root apical meristem, stem vascular system, embryo, root, embryonic root; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT1G03840.1); Has 52823 Blast hits to 19358 proteins in 362 species: Archae - 0; Bacteria - 0; Metazoa - 50211; Fungi - 300; Plants - 764; Viruses - 0; Other Eukaryotes - 1548 (source: NCBI BLink). protein_id AT5G44160.1p transcript_id AT5G44160.1 protein_id AT5G44160.1p transcript_id AT5G44160.1 LOCN 300-UTR3 COOR W/17773091-17773229,17773658-17774054,17774649-17775513 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/17796715-17796731 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR W/17955609-17955625 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR W/18854006-18854022 NOTE 1, +0 0 6 17 13 HITS At5g46490[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G46490.2 CDS gene_syn K11I1.8, K11I1_8 go_component intrinsic to membrane|GO:0031224||IEA go_process apoptosis|GO:0006915||IEA go_process defense response|GO:0006952||IEA go_process signal transduction|GO:0007165||IEA go_process innate immune response|GO:0045087||IEA go_function nucleotide binding|GO:0000166||IEA go_function transmembrane receptor activity|GO:0004888||IEA go_function ATP binding|GO:0005524||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_process defense response|GO:0006952||ISS product Disease resistance protein (TIR-NBS-LRR class) family note Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G31540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT5G46490.2p transcript_id AT5G46490.2 protein_id AT5G46490.2p transcript_id AT5G46490.2 LOCN 300-UTR3 COOR W/18850848-18851305,18851396-18852512,18852636-18852814,18852909-18853218,18853331-18853843 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR W/19670855-19670871 NOTE 1, +0 0 6 17 13 HITS At5g48540[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G48540.1 CDS gene_syn MJE7.18, MJE7_18 go_component endomembrane system|GO:0012505||IEA go_process response to karrikin|GO:0080167|20351290|IEP go_function molecular_function|GO:0003674||ND product receptor-like protein kinase-related family protein note receptor-like protein kinase-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: Receptor-like protein kinase-related family protein (TAIR:AT3G22060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). protein_id AT5G48540.1p transcript_id AT5G48540.1 protein_id AT5G48540.1p transcript_id AT5G48540.1 LOCN 1000-Promotor COOR C/19669096-19669887 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/19742547-19742563 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/20281914-20281930 NOTE 1, +0 0 6 17 13 HITS At5g49880[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G49880.1 CDS gene_syn K9P8.2, K9P8_2 go_process mitotic cell cycle checkpoint|GO:0007093||ISS product mitotic checkpoint family protein note mitotic checkpoint family protein; CONTAINS InterPro DOMAIN/s: Mitotic checkpoint (InterPro:IPR008672); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). protein_id AT5G49880.1p transcript_id AT5G49880.1 protein_id AT5G49880.1p transcript_id AT5G49880.1 LOCN 1000-Promotor COOR W/20282305-20282499,20282576-20282675,20282776-20282936,20283021-20283218,20283316-20283408,20283514-20283630,20284213-20284460,20284810-20284981,20285678-20285788,20285873-20286076,20286331-20286493,20286781-20286871,20286968-20287037,20287351-20287479,20287563-20287601,20287686-20287775 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR W/20398272-20398288 NOTE 1, +0 0 6 17 13 HITS At5g50140[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G50140.1 CDS gene_syn MPF21.16, MPF21_16 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND product Ankyrin repeat family protein note Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G34050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). protein_id AT5G50140.1p transcript_id AT5G50140.1 protein_id AT5G50140.1p transcript_id AT5G50140.1 LOCN 300-UTR3 COOR W/20395856-20396437,20397172-20398197 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR W/21530143-21530159 NOTE 1, +0 0 6 17 13 HITS At5g53110[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G53110.1 CDS gene_syn MFH8.3, MFH8_3 go_component endomembrane system|GO:0012505||IEA go_function zinc ion binding|GO:0008270||IEA go_process biological_process|GO:0008150||ND product RING/U-box superfamily protein note RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G46495.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). protein_id AT5G53110.1p transcript_id AT5G53110.1 protein_id AT5G53110.1p transcript_id AT5G53110.1 LOCN Intron COOR W/21529022-21529736,21532575-21533008 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/24187844-24187860 NOTE 1, +0 0 6 17 13 CLON GTAATTACATAGGTATG[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR W/25264565-25264581 NOTE 1, +0 0 6 17 13