CLON CATGTATAATGTCA[About SAGE] 
TYPE SAGE Target
CHRO chr1
EVAL 100
COOR W/19612505-19612518

HITS At1g52650[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G52650.1 CDS gene_syn F6D8.13, F6D8_13 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product F-box/RNI-like superfamily protein note F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G13960.1); Has 1747 Blast hits to 1702 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1747; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G52650.1p transcript_id AT1G52650.1 protein_id AT1G52650.1p transcript_id AT1G52650.1 LOCN 300-UTR3 COOR W/19610643-19610763,19610851-19611770,19611843-19611983,19612076-19612417 HITS At1g52660[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G52660.1 CDS gene_syn F6D8.12, F6D8_12 go_process apoptosis|GO:0006915||IEA go_process defense response|GO:0006952||IEA go_function ATP binding|GO:0005524||IEA go_process defense response|GO:0006952||ISS product P-loop containing nucleoside triphosphate hydrolases superfamily protein note P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G15700.1); Has 8463 Blast hits to 8404 proteins in 284 species: Archae - 3; Bacteria - 77; Metazoa - 3; Fungi - 0; Plants - 8374; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G52660.1p transcript_id AT1G52660.1 protein_id AT1G52660.1p transcript_id AT1G52660.1 LOCN 1000-Promotor COOR W/19613475-19614249,19614334-19614672,19614771-19614796 CLON CATGTATAATGTCA[About SAGE] TYPE SAGE Target CHRO chr1 EVAL 100 COOR W/27431-27444 HITS At1g01040[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01040.1 CDS gene_syn ABNORMAL SUSPENSOR 1, ASU1, ATDCL1, CAF, CARPEL FACTORY, DCL1, DICER-LIKE 1, EMB60, EMB76, EMBRYO DEFECTIVE 60, EMBRYO DEFECTIVE 76, SHORT INTEGUMENTS 1, SIN1, SUS1, SUSPENSOR 1, T25K16.4, T25K16_4, dicer-like 1 gene DCL1 function Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. go_component nucleus|GO:0005634|15821876|IDA go_component nucleus|GO:0005634|17369351|IDA go_component nuclear dicing body|GO:0010445|17442570|IDA go_process cytokinesis|GO:0000910|10556049|IMP go_process RNA processing|GO:0006396|12225663|ISS go_process virus induced gene silencing|GO:0009616|17090584|IMP go_process embryonic pattern specification|GO:0009880|8787738|IMP go_process flower development|GO:0009908|8787738|TAS go_process suspensor development|GO:0010098||IMP go_process vegetative to reproductive phase transition of meristem|GO:0010228|8787738|IMP go_process production of ta-siRNAs involved in RNA interference|GO:0010267|16699516|IMP go_process production of lsiRNA involved in RNA interference|GO:0010599|18003861|IMP go_process production of siRNA involved in RNA interference|GO:0030422|17558406|IMP go_process primary microRNA processing|GO:0031053|16144699|TAS go_process production of miRNAs involved in gene silencing by miRNA|GO:0035196|16810317|IGI go_process mRNA cleavage involved in gene silencing by miRNA|GO:0035279|15851028|IMP go_function double-stranded RNA binding|GO:0003725|15821876|IDA go_function ribonuclease III activity|GO:0004525||ISS go_function protein binding|GO:0005515|15821876|IPI go_function ATP-dependent helicase activity|GO:0008026||ISS product dicer-like 1 note dicer-like 1 (DCL1); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Dicer double-stranded RNA-binding fold (InterPro:IPR005034); BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.2); Has 21958 Blast hits to 17420 proteins in 2982 species: Archae - 328; Bacteria - 11461; Metazoa - 3615; Fungi - 1668; Plants - 1373; Viruses - 45; Other Eukaryotes - 3468 (source: NCBI BLink). protein_id AT1G01040.1p transcript_id AT1G01040.1 protein_id AT1G01040.1p transcript_id AT1G01040.1 LOCN Exon COOR W/23519-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27533,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31079 HITS At1g01040[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01040.2 CDS gene_syn ABNORMAL SUSPENSOR 1, ASU1, ATDCL1, CAF, CARPEL FACTORY, DCL1, DICER-LIKE 1, EMB60, EMB76, EMBRYO DEFECTIVE 60, EMBRYO DEFECTIVE 76, SHORT INTEGUMENTS 1, SIN1, SUS1, SUSPENSOR 1, T25K16.4, T25K16_4, dicer-like 1 gene DCL1 function Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. go_component nucleus|GO:0005634|15821876|IDA go_component nucleus|GO:0005634|17369351|IDA go_component nuclear dicing body|GO:0010445|17442570|IDA go_process cytokinesis|GO:0000910|10556049|IMP go_process RNA processing|GO:0006396|12225663|ISS go_process virus induced gene silencing|GO:0009616|17090584|IMP go_process embryonic pattern specification|GO:0009880|8787738|IMP go_process flower development|GO:0009908|8787738|TAS go_process suspensor development|GO:0010098||IMP go_process vegetative to reproductive phase transition of meristem|GO:0010228|8787738|IMP go_process production of ta-siRNAs involved in RNA interference|GO:0010267|16699516|IMP go_process production of lsiRNA involved in RNA interference|GO:0010599|18003861|IMP go_process production of siRNA involved in RNA interference|GO:0030422|17558406|IMP go_process primary microRNA processing|GO:0031053|16144699|TAS go_process production of miRNAs involved in gene silencing by miRNA|GO:0035196|16810317|IGI go_process mRNA cleavage involved in gene silencing by miRNA|GO:0035279|15851028|IMP go_function double-stranded RNA binding|GO:0003725|15821876|IDA go_function ribonuclease III activity|GO:0004525||ISS go_function protein binding|GO:0005515|15821876|IPI go_function ATP-dependent helicase activity|GO:0008026||ISS product dicer-like 1 note dicer-like 1 (DCL1); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.1). protein_id AT1G01040.2p transcript_id AT1G01040.2 protein_id AT1G01040.2p transcript_id AT1G01040.2 LOCN Exon COOR W/23519-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27536,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31079 CLON CATGTATAATGTCA[About SAGE] TYPE SAGE Target CHRO chr5 EVAL 100 COOR W/1054104-1054117 HITS At5g03905[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G03905.1 CDS go_process iron-sulfur cluster assembly|GO:0016226||IEA go_function structural molecule activity|GO:0005198||IEA go_function iron-sulfur cluster binding|GO:0051536||IEA product Iron-sulphur cluster biosynthesis family protein note Iron-sulphur cluster biosynthesis family protein; FUNCTIONS IN: iron-sulfur cluster binding, structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FeS cluster biogenesis (InterPro:IPR000361), FeS cluster insertion (InterPro:IPR016092); BEST Arabidopsis thaliana protein match is: chloroplast-localized ISCA-like protein (TAIR:AT1G10500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT5G03905.1p transcript_id AT5G03905.1 protein_id AT5G03905.1p transcript_id AT5G03905.1 LOCN 300-UTR3 COOR W/1052728-1052904,1053375-1053499,1053573-1053681,1053976-1054041 HITS At5g03910[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G03910.1 CDS gene_syn ABC2 homolog 12, ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATATH12, ATH12, F8F6.120, F8F6_120 gene ATH12 function member of ATH subfamily go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_function transporter activity|GO:0005215|11346655|ISS go_function transporter activity|GO:0005215||ISS go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS product ABC2 homolog 12 note ABC2 homolog 12 (ATH12); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 14 (TAIR:AT1G28010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). protein_id AT5G03910.1p transcript_id AT5G03910.1 protein_id AT5G03910.1p transcript_id AT5G03910.1 LOCN 300-UTR3 COOR C/1054313-1054459,1054569-1054698,1054780-1054967,1055064-1055149,1055249-1055465,1055587-1055670,1055772-1056038,1056123-1056230,1056305-1056391,1056515-1057105