CLON GATCTTCTTCTTCGATT[About MPSS mRNA] 
TYPE MPSS mRNA Target
CHRO chr1
EVAL 100.00
COOR C/45332-45348
NOTE 0 69 42 6 68 4 30 11 24 0 0 10 12 9 0 0 20

HITS At1g01080[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01080.1 CDS gene_syn T25K16.19, T25K16_19 go_component nucleus|GO:0005634|14617066|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, nucleus, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1); Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819; Bacteria - 303967; Metazoa - 99035; Fungi - 14863; Plants - 31737; Viruses - 35534; Other Eukaryotes - 13112 (source: NCBI BLink). protein_id AT1G01080.1p transcript_id AT1G01080.1 protein_id AT1G01080.1p transcript_id AT1G01080.1 LOCN 300-UTR3 COOR C/45503-45559,45646-45954,46044-46145,46376-46789 HITS At1g01080[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01080.2 CDS gene_syn T25K16.19, T25K16_19 go_component chloroplast|GO:0009507|18431481|IDA go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01080.2p transcript_id AT1G01080.2 protein_id AT1G01080.2p transcript_id AT1G01080.2 LOCN 300-UTR3 COOR C/45503-45559,45646-45954,46044-46145,46373-46789 CLON GATCTTCTTCTTCGATT[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr5 EVAL 100.00 COOR C/16810395-16810411 NOTE 0 69 42 6 68 4 30 11 24 0 0 10 12 9 0 0 20 HITS At5g42020[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G42020.1 CDS gene_syn BIP, BIP2, MJC20.12, MJC20_12, luminal binding protein gene BIP2 function Luminal binding protein (BiP2) involved in polar nuclei fusion during proliferation of endosperm nuclei. go_component cell wall|GO:0005618|16287169|IDA go_component nucleus|GO:0005634|14617066|IDA go_component nucleolus|GO:0005730|15496452|IDA go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component membrane|GO:0016020|17432890|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_function ATP binding|GO:0005524||IEA go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_component endoplasmic reticulum|GO:0005783||TAS go_component endoplasmic reticulum lumen|GO:0005788|11402207|TAS go_process protein folding|GO:0006457|11402207|TAS go_process protein folding|GO:0006457||ISS go_process response to heat|GO:0009408|8888624|IDA go_process polar nucleus fusion|GO:0010197|20080634|IGI go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP product Heat shock protein 70 (Hsp 70) family protein note BIP2; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to heat, polar nucleus fusion, response to endoplasmic reticulum stress; LOCATED IN: in 8 components; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G28540.1); Has 36681 Blast hits to 36078 proteins in 4871 species: Archae - 169; Bacteria - 17752; Metazoa - 3980; Fungi - 1822; Plants - 1284; Viruses - 342; Other Eukaryotes - 11332 (source: NCBI BLink). protein_id AT5G42020.1p transcript_id AT5G42020.1 protein_id AT5G42020.1p transcript_id AT5G42020.1 LOCN Intron COOR C/16807697-16808204,16808294-16809011,16809221-16809463,16809570-16809784,16809866-16810133,16810426-16810480 HITS At5g42020[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G42020.2 CDS gene_syn BIP, BIP2, MJC20.12, MJC20_12, luminal binding protein gene BIP2 function Luminal binding protein (BiP2) involved in polar nuclei fusion during proliferation of endosperm nuclei. go_component cell wall|GO:0005618|16287169|IDA go_component nucleus|GO:0005634|14617066|IDA go_component nucleolus|GO:0005730|15496452|IDA go_component vacuole|GO:0005773|15539469|IDA go_component plasma membrane|GO:0005886|17151019|IDA go_component plasma membrane|GO:0005886|17317660|IDA go_component membrane|GO:0016020|17432890|IDA go_process response to cadmium ion|GO:0046686|16502469|IEP go_function ATP binding|GO:0005524||IEA go_component endoplasmic reticulum|GO:0005783|16618929|IDA go_component endoplasmic reticulum|GO:0005783||TAS go_component endoplasmic reticulum lumen|GO:0005788|11402207|TAS go_process protein folding|GO:0006457|11402207|TAS go_process protein folding|GO:0006457||ISS go_process response to heat|GO:0009408|8888624|IDA go_process polar nucleus fusion|GO:0010197|20080634|IGI go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP product Heat shock protein 70 (Hsp 70) family protein note luminal binding protein (BIP); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to heat, polar nucleus fusion, response to endoplasmic reticulum stress; LOCATED IN: in 8 components; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G28540.1); Has 34912 Blast hits to 34423 proteins in 4667 species: Archae - 159; Bacteria - 17150; Metazoa - 3676; Fungi - 1797; Plants - 1301; Viruses - 340; Other Eukaryotes - 10489 (source: NCBI BLink). protein_id AT5G42020.2p transcript_id AT5G42020.2 protein_id AT5G42020.2p transcript_id AT5G42020.2 LOCN Intron COOR C/16807697-16808008,16808174-16808204,16808294-16809011,16809221-16809463,16809570-16809784,16809866-16810133,16810426-16810480