CLON GATCTTCGAGCTGCAGC[About MPSS mRNA] 
TYPE MPSS mRNA Target
CHRO chr1
EVAL 100.00
COOR W/29961-29977
NOTE 0 0 1 0 0 2 6 0 2 0 0 0 0 0 0 5 0

HITS At1g01040[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01040.1 CDS gene_syn ABNORMAL SUSPENSOR 1, ASU1, ATDCL1, CAF, CARPEL FACTORY, DCL1, DICER-LIKE 1, EMB60, EMB76, EMBRYO DEFECTIVE 60, EMBRYO DEFECTIVE 76, SHORT INTEGUMENTS 1, SIN1, SUS1, SUSPENSOR 1, T25K16.4, T25K16_4, dicer-like 1 gene DCL1 function Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. go_component nucleus|GO:0005634|15821876|IDA go_component nucleus|GO:0005634|17369351|IDA go_component nuclear dicing body|GO:0010445|17442570|IDA go_process cytokinesis|GO:0000910|10556049|IMP go_process RNA processing|GO:0006396|12225663|ISS go_process virus induced gene silencing|GO:0009616|17090584|IMP go_process embryonic pattern specification|GO:0009880|8787738|IMP go_process flower development|GO:0009908|8787738|TAS go_process suspensor development|GO:0010098||IMP go_process vegetative to reproductive phase transition of meristem|GO:0010228|8787738|IMP go_process production of ta-siRNAs involved in RNA interference|GO:0010267|16699516|IMP go_process production of lsiRNA involved in RNA interference|GO:0010599|18003861|IMP go_process production of siRNA involved in RNA interference|GO:0030422|17558406|IMP go_process primary microRNA processing|GO:0031053|16144699|TAS go_process production of miRNAs involved in gene silencing by miRNA|GO:0035196|16810317|IGI go_process mRNA cleavage involved in gene silencing by miRNA|GO:0035279|15851028|IMP go_function double-stranded RNA binding|GO:0003725|15821876|IDA go_function ribonuclease III activity|GO:0004525||ISS go_function protein binding|GO:0005515|15821876|IPI go_function ATP-dependent helicase activity|GO:0008026||ISS product dicer-like 1 note dicer-like 1 (DCL1); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Dicer double-stranded RNA-binding fold (InterPro:IPR005034); BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.2); Has 21958 Blast hits to 17420 proteins in 2982 species: Archae - 328; Bacteria - 11461; Metazoa - 3615; Fungi - 1668; Plants - 1373; Viruses - 45; Other Eukaryotes - 3468 (source: NCBI BLink). protein_id AT1G01040.1p transcript_id AT1G01040.1 protein_id AT1G01040.1p transcript_id AT1G01040.1 LOCN Exon COOR W/23519-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27533,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31079 HITS At1g01040[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01040.2 CDS gene_syn ABNORMAL SUSPENSOR 1, ASU1, ATDCL1, CAF, CARPEL FACTORY, DCL1, DICER-LIKE 1, EMB60, EMB76, EMBRYO DEFECTIVE 60, EMBRYO DEFECTIVE 76, SHORT INTEGUMENTS 1, SIN1, SUS1, SUSPENSOR 1, T25K16.4, T25K16_4, dicer-like 1 gene DCL1 function Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. go_component nucleus|GO:0005634|15821876|IDA go_component nucleus|GO:0005634|17369351|IDA go_component nuclear dicing body|GO:0010445|17442570|IDA go_process cytokinesis|GO:0000910|10556049|IMP go_process RNA processing|GO:0006396|12225663|ISS go_process virus induced gene silencing|GO:0009616|17090584|IMP go_process embryonic pattern specification|GO:0009880|8787738|IMP go_process flower development|GO:0009908|8787738|TAS go_process suspensor development|GO:0010098||IMP go_process vegetative to reproductive phase transition of meristem|GO:0010228|8787738|IMP go_process production of ta-siRNAs involved in RNA interference|GO:0010267|16699516|IMP go_process production of lsiRNA involved in RNA interference|GO:0010599|18003861|IMP go_process production of siRNA involved in RNA interference|GO:0030422|17558406|IMP go_process primary microRNA processing|GO:0031053|16144699|TAS go_process production of miRNAs involved in gene silencing by miRNA|GO:0035196|16810317|IGI go_process mRNA cleavage involved in gene silencing by miRNA|GO:0035279|15851028|IMP go_function double-stranded RNA binding|GO:0003725|15821876|IDA go_function ribonuclease III activity|GO:0004525||ISS go_function protein binding|GO:0005515|15821876|IPI go_function ATP-dependent helicase activity|GO:0008026||ISS product dicer-like 1 note dicer-like 1 (DCL1); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.1). protein_id AT1G01040.2p transcript_id AT1G01040.2 protein_id AT1G01040.2p transcript_id AT1G01040.2 LOCN Exon COOR W/23519-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27536,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31079