CLON GATCTCTCTCTTTCTCT[About MPSS mRNA] 
TYPE MPSS mRNA Target
CHRO chr1
EVAL 100.00
COOR W/22700323-22700339
NOTE 6 0 1 3 0 0 3 0 0 0 0 0 0 0 0 0 0

HITS At1g61520[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G61520.1 CDS gene_syn LHCA3, LHCA3*1, LHCI-680, T25B24.12, T25B24_12, photosystem I light harvesting complex gene 3 gene LHCA3 function PSI type III chlorophyll a/b-binding protein (Lhca3*1) go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component thylakoid|GO:0009579|18633119|IDA go_component membrane|GO:0016020|17432890|IDA go_process photosynthesis, light harvesting|GO:0009765||IEA go_component plastoglobule|GO:0010287|16414959|IDA go_component light-harvesting complex|GO:0030076||ISS go_process photosynthesis|GO:0015979||ISS go_function chlorophyll binding|GO:0016168||ISS product photosystem I light harvesting complex gene 3 note photosystem I light harvesting complex gene 3 (LHCA3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 5 (TAIR:AT1G45474.2); Has 2380 Blast hits to 2284 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 2029; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink). protein_id AT1G61520.1p transcript_id AT1G61520.1 protein_id AT1G61520.1p transcript_id AT1G61520.1 LOCN Intron COOR W/22700152-22700295,22700385-22700446,22700534-22701149 HITS At1g61520[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G61520.3 CDS gene_syn LHCA3, LHCA3*1, LHCI-680, T25B24.12, T25B24_12, photosystem I light harvesting complex gene 3 gene LHCA3 function PSI type III chlorophyll a/b-binding protein (Lhca3*1) go_process photosynthesis, light harvesting|GO:0009765||IEA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component plastoglobule|GO:0010287|16414959|IDA go_component light-harvesting complex|GO:0030076||ISS go_process photosynthesis|GO:0015979||ISS go_function chlorophyll binding|GO:0016168||ISS product photosystem I light harvesting complex gene 3 note photosystem I light harvesting complex gene 3 (LHCA3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, plastoglobule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 5 (TAIR:AT1G45474.2). protein_id AT1G61520.3p transcript_id AT1G61520.3 protein_id AT1G61520.3p transcript_id AT1G61520.3 LOCN Intron COOR W/22700152-22700295,22700385-22700446,22700534-22701149 HITS At1g61520[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G61520.2 CDS gene_syn LHCA3, LHCA3*1, LHCI-680, T25B24.12, T25B24_12, photosystem I light harvesting complex gene 3 gene LHCA3 function PSI type III chlorophyll a/b-binding protein (Lhca3*1) go_component chloroplast|GO:0009507|18431481|IDA go_component membrane|GO:0016020|17432890|IDA go_process photosynthesis, light harvesting|GO:0009765||IEA go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA go_component plastoglobule|GO:0010287|16414959|IDA go_component light-harvesting complex|GO:0030076||ISS go_process photosynthesis|GO:0015979||ISS go_function chlorophyll binding|GO:0016168||ISS product photosystem I light harvesting complex gene 3 note photosystem I light harvesting complex gene 3 (LHCA3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, chloroplast, plastoglobule, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 5 (TAIR:AT1G45474.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G61520.2p transcript_id AT1G61520.2 protein_id AT1G61520.2p transcript_id AT1G61520.2 LOCN 300-UTR5 COOR W/22700493-22701149 CLON GATCTCTCTCTTTCTCT[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr1 EVAL 100.00 COOR W/13587-13603 NOTE 6 0 1 3 0 0 3 0 0 0 0 0 0 0 0 0 0 HITS At1g01030[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01030.1 CDS gene_syn NGA3, NGATHA3, T25K16.3, T25K16_3 gene NGA3 go_component cellular_component|GO:0005575||ND go_process flower development|GO:0009908|16603651|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process leaf development|GO:0048366|16603651|IMP go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product AP2/B3-like transcriptional factor family protein note NGATHA3 (NGA3); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G01500.1); Has 1380 Blast hits to 1379 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1380; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G01030.1p transcript_id AT1G01030.1 protein_id AT1G01030.1p transcript_id AT1G01030.1 LOCN 1000-Promotor COOR C/11864-12940 CLON GATCTCTCTCTTTCTCT[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr2 EVAL 100.00 COOR W/15023259-15023275 NOTE 6 0 1 3 0 0 3 0 0 0 0 0 0 0 0 0 0 HITS At2g35733[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G35733.1 CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT2G35733.1p transcript_id AT2G35733.1 protein_id AT2G35733.1p transcript_id AT2G35733.1 LOCN 1000-Promotor COOR C/15022676-15022867 HITS At2g35736[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G35736.1 CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25225.1); Has 78 Blast hits to 78 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT2G35736.1p transcript_id AT2G35736.1 protein_id AT2G35736.1p transcript_id AT2G35736.1 LOCN 300-UTR5 COOR C/15023084-15023254 HITS At2g35736[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G35736.2 CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25225.1). protein_id AT2G35736.2p transcript_id AT2G35736.2 protein_id AT2G35736.2p transcript_id AT2G35736.2 LOCN 300-UTR5 COOR C/15023084-15023254 HITS At2g35738[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G35738.1 ncRNA function Potential natural antisense gene, locus overlaps with AT2G35740 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT2G35738.1 LOCN 300-UTR5 COOR W/15023559-15023648,15023884-15024001,15024599-15025465 HITS At2g35738[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G35738.2 ncRNA function Potential natural antisense gene, locus overlaps with AT2G35740 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT2G35738.2 LOCN 300-UTR5 COOR W/15023559-15023810,15023884-15024286 HITS At2g35738[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G35738.3 ncRNA function Potential natural antisense gene, locus overlaps with AT2G35740 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product other RNA transcript_id AT2G35738.3 LOCN 1000-Promotor COOR W/15023581-15023648,15023884-15024001,15024477-15025334 CLON GATCTCTCTCTTTCTCT[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr2 EVAL 100.00 COOR C/16814620-16814636 NOTE 6 0 1 3 0 0 3 0 0 0 0 0 0 0 0 0 0 HITS At2g40250[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G40250.1 CDS gene_syn T7M7.5 go_component endomembrane system|GO:0012505||IEA go_process lipid metabolic process|GO:0006629||IEA go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA go_function carboxylesterase activity|GO:0004091||ISS product SGNH hydrolase-type esterase superfamily protein note SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, sepal, pedicel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G31540.1); Has 3497 Blast hits to 3457 proteins in 215 species: Archae - 0; Bacteria - 337; Metazoa - 0; Fungi - 15; Plants - 3125; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). protein_id AT2G40250.1p transcript_id AT2G40250.1 protein_id AT2G40250.1p transcript_id AT2G40250.1 LOCN Intron COOR W/16813330-16813953,16814677-16814950,16815064-16815251 CLON GATCTCTCTCTTTCTCT[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr3 EVAL 100.00 COOR C/8100697-8100713 NOTE 6 0 1 3 0 0 3 0 0 0 0 0 0 0 0 0 0 HITS At3g22880[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT3G22880.1 CDS gene_syn ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARLIM15, ATDMC1, DISRUPTION OF MEIOTIC CONTROL 1, DMC1 gene DMC1 function Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene. go_component nucleus|GO:0005634||IEA go_function nucleotide binding|GO:0000166||IEA go_function DNA binding|GO:0003677||IEA go_function ATP binding|GO:0005524||IEA go_function DNA-dependent ATPase activity|GO:0008094||IEA go_function nucleoside-triphosphatase activity|GO:0017111||IEA go_process DNA metabolic process|GO:0006259|20227352|IDA go_process DNA repair|GO:0006281||ISS go_process meiosis|GO:0007126|9025299|TAS go_process reciprocal meiotic recombination|GO:0007131||ISS go_process chiasma assembly|GO:0051026|19763177|IGI go_process chiasma assembly|GO:0051026|19763177|IMP go_function damaged DNA binding|GO:0003684||ISS go_function ATP binding|GO:0005524||ISS go_function DNA-dependent ATPase activity|GO:0008094||ISS product DNA repair (Rad51) family protein note DISRUPTION OF MEIOTIC CONTROL 1 (DMC1); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, meiosis, chiasma assembly, reciprocal meiotic recombination, DNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), DNA repair Rad51/transcription factor NusA, alpha-helical (InterPro:IPR010995), ATPase, AAA+ type, core (InterPro:IPR003593), Meiotic recombinase Dmc1 (InterPro:IPR011940), DNA recombination and repair protein, RecA-like (InterPro:IPR016467), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587), DNA recombination and repair protein Rad51, C-terminal (InterPro:IPR013632); BEST Arabidopsis thaliana protein match is: RAS associated with diabetes protein 51 (TAIR:AT5G20850.1); Has 11998 Blast hits to 11924 proteins in 3797 species: Archae - 689; Bacteria - 8026; Metazoa - 742; Fungi - 447; Plants - 503; Viruses - 22; Other Eukaryotes - 1569 (source: NCBI BLink). protein_id AT3G22880.1p transcript_id AT3G22880.1 protein_id AT3G22880.1p transcript_id AT3G22880.1 LOCN Intron COOR C/8097948-8097992,8098092-8098258,8098367-8098445,8098530-8098598,8098685-8098777,8098861-8098927,8099029-8099090,8099250-8099295,8099373-8099418,8099502-8099559,8099672-8099710,8099800-8099871,8099965-8100056,8100472-8100554,8100724-8100740 CLON GATCTCTCTCTTTCTCT[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr3 EVAL 100.00 COOR C/19564220-19564236 NOTE 6 0 1 3 0 0 3 0 0 0 0 0 0 0 0 0 0 HITS At3g52780[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT3G52780.1 CDS gene_syn ATPAP20, PAP20 gene PAP20 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function acid phosphatase activity|GO:0003993|16244908|ISS go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product Purple acid phosphatases superfamily protein note PAP20; FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 22 (TAIR:AT3G52820.1); Has 2203 Blast hits to 2179 proteins in 456 species: Archae - 3; Bacteria - 801; Metazoa - 198; Fungi - 77; Plants - 777; Viruses - 0; Other Eukaryotes - 347 (source: NCBI BLink). protein_id AT3G52780.1p transcript_id AT3G52780.1 protein_id AT3G52780.1p transcript_id AT3G52780.1 LOCN 300-UTR5 COOR C/19561525-19561708,19561796-19561884,19561966-19562296,19562462-19562705,19562844-19563141,19564058-19564195 HITS At3g52780[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT3G52780.2 CDS gene_syn ATPAP20, PAP20 gene PAP20 go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function acid phosphatase activity|GO:0003993|16244908|ISS go_function protein serine/threonine phosphatase activity|GO:0004722||ISS product Purple acid phosphatases superfamily protein note PAP20; FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 22 (TAIR:AT3G52820.1); Has 2133 Blast hits to 2115 proteins in 453 species: Archae - 1; Bacteria - 782; Metazoa - 195; Fungi - 75; Plants - 759; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink). protein_id AT3G52780.2p transcript_id AT3G52780.2 protein_id AT3G52780.2p transcript_id AT3G52780.2 LOCN 300-UTR5 COOR C/19561812-19561882,19561962-19562296,19562462-19562705,19562844-19563141,19564058-19564195 CLON GATCTCTCTCTTTCTCT[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr3 EVAL 100.00 COOR W/20302425-20302441 NOTE 6 0 1 3 0 0 3 0 0 0 0 0 0 0 0 0 0 HITS At3g54820[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT3G54820.1 CDS gene_syn PIP2;5, PIP2D, PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 gene PIP2;5 go_component membrane|GO:0016020||IEA go_component integral to membrane|GO:0016021||IEA go_process transport|GO:0006810||IEA go_process transmembrane transport|GO:0055085||IEA go_component membrane|GO:0016020||ISS go_process transport|GO:0006810||ISS go_function water channel activity|GO:0015250|11500536|ISS go_function water channel activity|GO:0015250||ISS product plasma membrane intrinsic protein 2;5 note plasma membrane intrinsic protein 2;5 (PIP2;5); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2 (TAIR:AT2G37170.1); Has 10866 Blast hits to 10851 proteins in 2236 species: Archae - 80; Bacteria - 5189; Metazoa - 1483; Fungi - 451; Plants - 2536; Viruses - 2; Other Eukaryotes - 1125 (source: NCBI BLink). protein_id AT3G54820.1p transcript_id AT3G54820.1 protein_id AT3G54820.1p transcript_id AT3G54820.1 LOCN Intron COOR W/20302117-20302420,20302538-20302833,20303389-20303529,20303619-20303738 CLON GATCTCTCTCTTTCTCT[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr5 EVAL 100.00 COOR C/8938570-8938586 NOTE 6 0 1 3 0 0 3 0 0 0 0 0 0 0 0 0 0 HITS At5g25620[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G25620.2 CDS gene_syn T14C9.160, T14C9_160, YUC6, YUCCA6 gene YUC6 go_function flavin-containing monooxygenase activity|GO:0004499||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function FAD binding|GO:0050660||IEA go_function NADP or NADPH binding|GO:0050661||IEA go_process auxin biosynthetic process|GO:0009851|16818609|IMP go_function monooxygenase activity|GO:0004497||ISS product Flavin-binding monooxygenase family protein note YUCCA6 (YUC6); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: auxin biosynthetic process; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT4G13260.1). protein_id AT5G25620.2p transcript_id AT5G25620.2 protein_id AT5G25620.2p transcript_id AT5G25620.2 LOCN 1000-Promotor COOR C/8935312-8935377,8935535-8935711,8935867-8935989,8936084-8936332,8937535-8938200 HITS At5g25620[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G25620.1 CDS gene_syn T14C9.160, T14C9_160, YUC6, YUCCA6 gene YUC6 go_function flavin-containing monooxygenase activity|GO:0004499||IEA go_function oxidoreductase activity|GO:0016491||IEA go_function FAD binding|GO:0050660||IEA go_function NADP or NADPH binding|GO:0050661||IEA go_process auxin biosynthetic process|GO:0009851|16818609|IMP go_function monooxygenase activity|GO:0004497||ISS product Flavin-binding monooxygenase family protein note YUCCA6 (YUC6); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: auxin biosynthetic process; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT4G13260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT5G25620.1p transcript_id AT5G25620.1 protein_id AT5G25620.1p transcript_id AT5G25620.1 LOCN 1000-Promotor COOR C/8935520-8935711,8935867-8935989,8936084-8936332,8937535-8938224 CLON GATCTCTCTCTTTCTCT[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr5 EVAL 100.00 COOR C/26085281-26085297 NOTE 6 0 1 3 0 0 3 0 0 0 0 0 0 0 0 0 0 HITS At5g65274[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G65274.1 CDS go_component cytoskeleton|GO:0005856||IEA go_process regulation of actin filament polymerization|GO:0030833||IEA go_function molecular_function|GO:0003674||ND product ARP2/3 complex 16 kDa subunit (p16-Arc) note ARP2/3 complex 16 kDa subunit (p16-Arc); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of actin filament polymerization; LOCATED IN: cytoskeleton; CONTAINS InterPro DOMAIN/s: ARP2/3 complex 16kDa subunit (p16-Arc) (InterPro:IPR006789); BEST Arabidopsis thaliana protein match is: ARP2/3 complex 16 kDa subunit (p16-Arc) (TAIR:AT4G01710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT5G65274.1p transcript_id AT5G65274.1 protein_id AT5G65274.1p transcript_id AT5G65274.1 LOCN 300-UTR5 COOR W/26085300-26085397,26085476-26085548,26085639-26085739,26085825-26085960