CLON GATCATGTTCTTGAGAT[About MPSS mRNA] 
TYPE MPSS mRNA Target
CHRO chr1
EVAL 100.00
COOR C/6205-6221
NOTE 7 28 46 33 12 14 34 11 11 28 4 0 9 30 27 46 48


CLON GATCATGTTCTTGAGAT[About MPSS mRNA] 
TYPE MPSS mRNA Target
CHRO chr1
EVAL 100.00
COOR C/5560-5576
NOTE 7 28 46 33 12 14 34 11 11 28 4 0 9 30 27 46 48

HITS At1g01010[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01010.1 CDS gene_syn ANAC001, NAC domain containing protein 1, NAC001, T25K16.1, T25K16_1 gene NAC001 go_process regulation of transcription|GO:0045449||IEA go_component cellular_component|GO:0005575||ND go_process multicellular organismal development|GO:0007275||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS product NAC domain containing protein 1 note NAC domain containing protein 1 (NAC001); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 69 (TAIR:AT4G01550.1); Has 2503 Blast hits to 2496 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2502; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G01010.1p transcript_id AT1G01010.1 protein_id AT1G01010.1p transcript_id AT1G01010.1 LOCN Exon COOR W/3760-3913,3996-4276,4486-4605,4706-5095,5174-5326,5439-5630 CLON GATCATGTTCTTGAGAT[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr1 EVAL 100.00 COOR W/3465543-3465559 NOTE 7 28 46 33 12 14 34 11 11 28 4 0 9 30 27 46 48 HITS At1g10510[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G10510.1 CDS gene_syn T10O24.12, T10O24_12, emb2004, embryo defective 2004 gene emb2004 go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12766230|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_component mitochondrion|GO:0005739|16618929|IDA go_component plastid|GO:0009536|16618929|IDA go_process embryo development ending in seed dormancy|GO:0009793||NAS product RNI-like superfamily protein note embryo defective 2004 (emb2004); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RAN GTPase activating protein 1 (TAIR:AT3G63130.2); Has 21704 Blast hits to 6781 proteins in 315 species: Archae - 0; Bacteria - 982; Metazoa - 9646; Fungi - 490; Plants - 1111; Viruses - 0; Other Eukaryotes - 9475 (source: NCBI BLink). protein_id AT1G10510.1p transcript_id AT1G10510.1 protein_id AT1G10510.1p transcript_id AT1G10510.1 LOCN Exon COOR W/3461771-3461818,3461902-3462175,3462395-3462607,3462743-3462801,3462903-3463040,3463238-3463312,3463420-3463503,3463614-3463675,3463781-3463850,3464037-3464112,3464210-3464340,3464458-3464517,3464609-3464683,3464773-3464877,3464977-3465072,3465168-3465248,3465340-3465441,3465522-3465590 HITS At1g10520[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G10520.1 CDS gene_syn T10O24.13, T10O24_13 go_component intracellular|GO:0005622||IEA go_process DNA replication|GO:0006260||IEA go_process DNA repair|GO:0006281||IEA go_function DNA binding|GO:0003677||IEA go_function catalytic activity|GO:0003824||IEA go_function DNA-directed DNA polymerase activity|GO:0003887||IEA go_function nucleotidyltransferase activity|GO:0016779||IEA go_function DNA-directed DNA polymerase activity|GO:0003887||ISS product DNA polymerase lambda (POLL) note DNA polymerase lambda (POLL); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, catalytic activity, nucleotidyltransferase activity; INVOLVED IN: DNA repair, DNA replication; LOCATED IN: intracellular; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934), DNA-directed DNA polymerase, family X, beta-like (InterPro:IPR002008), DNA-directed DNA polymerase, family X, beta-like, N-terminal (InterPro:IPR010996), DNA polymerase lambda, fingers domain (InterPro:IPR018944), DNA polymerase family X, binding site (InterPro:IPR019843), DNA-directed DNA polymerase X (InterPro:IPR002054), BRCT (InterPro:IPR001357), DNA polymerase X (InterPro:IPR022312); Has 1887 Blast hits to 1879 proteins in 557 species: Archae - 50; Bacteria - 688; Metazoa - 533; Fungi - 209; Plants - 50; Viruses - 7; Other Eukaryotes - 350 (source: NCBI BLink). protein_id AT1G10520.1p transcript_id AT1G10520.1 protein_id AT1G10520.1p transcript_id AT1G10520.1 LOCN 1000-Promotor COOR W/3465964-3466074,3466197-3466337,3466532-3466849,3466996-3467074,3467154-3467284,3467439-3467501,3467701-3467880,3467973-3468026,3468110-3468198,3468287-3468377,3468568-3468648,3468799-3468866,3468967-3469051,3469150-3469248