CODE At1g01060 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr1 TITL AT1G01060.2 CDS gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6 gene LHY function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process response to auxin stimulus|GO:0009733|16463103|IEP go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP go_process response to gibberellin stimulus|GO:0009739|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process regulation of circadian rhythm|GO:0042752|12007421|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process response to cadmium ion|GO:0046686|16463103|IEP go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9657154|ISS product Homeodomain-like superfamily protein note LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2; Bacteria - 257; Metazoa - 292; Fungi - 162; Plants - 1048; Viruses - 29; Other Eukaryotes - 679 (source: NCBI BLink). protein_id AT1G01060.2p transcript_id AT1G01060.2 protein_id AT1G01060.2p transcript_id AT1G01060.2 COOR C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061 HITS BP781603 [GenBank] TYPE ESTs EVAL e-118 LOCN Exon COOR W/33379-33597,33989-34180 NOTE BP782731 BP790455 AV793100 BP787483 AV518592 HITS RAFL07-43-F02 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.10 LOCN Exon COOR C/33379-33589,33981-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37111 HITS AV439916 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33730-34254 NOTE BP604428 BP611805 AV786398 AV792580 AV805408 AV809310 AV816640 BP783401 EH965397 BP785164 HITS AV519732 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33736-34312 NOTE AV794517 AA650979 EH922478 BP793781 AV519727 HITS AJ006404 [GenBank] TYPE Community cDNA EVAL 97.86 LOCN Exon COOR C/33741-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37203,37373-37398,37569-37685 HITS AV782430 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33743-34329 NOTE EH897895 HITS RAFL04-17-F21 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL 0.0 LOCN Exon COOR C/33743-33968,33979-34329,34403-34533 HITS RAFL04-17-F21 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.38 LOCN Exon COOR C/33743-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37203,37373-37779 HITS EG520849 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33745-34330 NOTE EG520850 EH853476 AV807028 AV793959 HITS BX836221 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33770-34333,34405-34588 NOTE AV519209 HITS BX836221 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR W/33770-34333,34405-34588 HITS BX835664 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33794-34329,34403-34817 NOTE EL285160 EL206414 CF773267 EH957137 AI993521 AA713203 HITS BX835664 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR W/33794-34329,34403-34817 HITS BX817115 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/33923-34326,34400-35474,35567-35647,35730-35963,36626-36685,36810-36920,37022-37204,37374-37395,37567-37828 HITS DR750341 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33992-34326,34400-34979 NOTE EL310869 R30439 GH718137 DR750570 EL098580 EL221576 EL071273 EL201800 EH906782 GH718138 EH968369 HITS AY519507 [GenBank] TYPE Community cDNA EVAL 99.90 LOCN Exon COOR C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061 HITS PYAt1g01060 [Seq] [About Peking Yale TF] [Order from ABRC] (ORF amplified by RT-PCR and cloned into the Gateway( TM) system; 5' and 3' end sequencing has been performed on this clone.) TYPE PY TF EVAL 0.0 LOCN Exon COOR C/33995-34326,34400-35474,35567-35647,35730-35965,36626-36685,36810-36923,37025-37061 HITS GATCGGTGTTGGAACAT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/34141-34157 NOTE 0 47 0 0 0 15 0 0 115 11 0 0 0 105 1 0 18 HITS 261569_at [gAtlas] TYPE Affy Probes EVAL e-146 LOCN Exon COOR C/34174-34326,34400-34660 HITS AV442073 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/34686-35172 HITS DR262753 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/34740-35469 NOTE AV525957 DR262755 EL125752 EL269840 EL187904 HITS GATCAAAACTTGGCTTC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/34762-34778 NOTE 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 HITS GATCTTGCAGAGCTGTG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/34775-34791 NOTE 0 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 HITS DR750340 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/35110-35474,35567-35647,35730-35965,36626-36685,36810-36923,37025-37061 NOTE DR750333 DR262752 DR262754 DR262751 DN604658 EL069143 EH900352 EH808438 HITS BX839544 [GenBank] [Order] TYPE GSLT cDNA EVAL e-140 LOCN Exon COOR C/35776-35908,36624-36685,36809-36920,37022-37204,37374-37396,37567-37826 HITS BX840279 [GenBank] TYPE ESTs EVAL e-104 LOCN Exon COOR C/35820-35965,36627-36685,36809-36920,37022-37204,37567-37757 HITS BX840279 [GenBank] [Order] TYPE GSLT cDNA EVAL e-104 LOCN Exon COOR C/35820-35965,36627-36685,36809-36920,37022-37204,37374-37396,37567-37757 HITS EG465569 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/35859-35965,36626-36685,36810-36920,37022-37203,37373-37779 NOTE EG517068 EG517069 EH811528 HITS BX839544 [GenBank] TYPE ESTs EVAL e-140 LOCN Exon COOR C/36624-36685,36809-36920,37022-37204,37567-37826 NOTE AV528276 AV821864 EL210103 ES162100 EL011803 HITS GATCTCCCCAAACATGA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR5 COOR W/37135-37151 NOTE 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 HITS GATCTCTGTTTGGCTGC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 1000-Promotor COOR C/37501-37517 NOTE 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 CODE At1g01060 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr1 TITL AT1G01060.1 CDS gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6 gene LHY function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process response to auxin stimulus|GO:0009733|16463103|IEP go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP go_process response to gibberellin stimulus|GO:0009739|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process regulation of circadian rhythm|GO:0042752|12007421|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process response to cadmium ion|GO:0046686|16463103|IEP go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9657154|ISS product Homeodomain-like superfamily protein note LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2; Bacteria - 257; Metazoa - 292; Fungi - 162; Plants - 1048; Viruses - 29; Other Eukaryotes - 679 (source: NCBI BLink). protein_id AT1G01060.1p transcript_id AT1G01060.1 protein_id AT1G01060.1p transcript_id AT1G01060.1 COOR C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061 HITS BP781603 [GenBank] TYPE ESTs EVAL e-118 LOCN Exon COOR W/33379-33597,33989-34180 NOTE BP782731 BP790455 AV793100 BP787483 AV518592 HITS RAFL07-43-F02 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.10 LOCN Exon COOR C/33379-33589,33981-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37111 HITS AV439916 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33730-34254 NOTE BP604428 BP611805 AV786398 AV792580 AV805408 AV809310 AV816640 BP783401 EH965397 BP785164 HITS AV519732 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33736-34312 NOTE AV794517 AA650979 EH922478 BP793781 AV519727 HITS AJ006404 [GenBank] TYPE Community cDNA EVAL 97.86 LOCN Exon COOR C/33741-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37203,37373-37398,37569-37685 HITS AV782430 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33743-34329 NOTE EH897895 HITS RAFL04-17-F21 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL 0.0 LOCN Exon COOR C/33743-33968,33979-34329,34403-34533 HITS RAFL04-17-F21 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.38 LOCN Exon COOR C/33743-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37203,37373-37779 HITS EG520849 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33745-34330 NOTE EG520850 EH853476 AV807028 AV793959 HITS BX836221 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33770-34333,34405-34588 NOTE AV519209 HITS BX836221 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR W/33770-34333,34405-34588 HITS BX835664 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33794-34329,34403-34817 NOTE EL285160 EL206414 CF773267 EH957137 AI993521 AA713203 HITS BX835664 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR W/33794-34329,34403-34817 HITS BX817115 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/33923-34326,34400-35474,35567-35647,35730-35963,36626-36685,36810-36920,37022-37204,37374-37395,37567-37828 HITS DR750341 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33992-34326,34400-34979 NOTE EL310869 R30439 GH718137 DR750570 EL098580 EL221576 EL071273 EL201800 EH906782 GH718138 EH968369 HITS AY519507 [GenBank] TYPE Community cDNA EVAL 99.90 LOCN Exon COOR C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061 HITS PYAt1g01060 [Seq] [About Peking Yale TF] [Order from ABRC] (ORF amplified by RT-PCR and cloned into the Gateway( TM) system; 5' and 3' end sequencing has been performed on this clone.) TYPE PY TF EVAL 0.0 LOCN Exon COOR C/33995-34326,34400-35474,35567-35647,35730-35965,36626-36685,36810-36923,37025-37061 HITS GATCGGTGTTGGAACAT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/34141-34157 NOTE 0 47 0 0 0 15 0 0 115 11 0 0 0 105 1 0 18 HITS 261569_at [gAtlas] TYPE Affy Probes EVAL e-146 LOCN Exon COOR C/34174-34326,34400-34660 HITS AV442073 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/34686-35172 HITS DR262753 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/34740-35469 NOTE AV525957 DR262755 EL125752 EL269840 EL187904 HITS GATCAAAACTTGGCTTC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/34762-34778 NOTE 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 HITS GATCTTGCAGAGCTGTG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/34775-34791 NOTE 0 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 HITS DR750340 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/35110-35474,35567-35647,35730-35965,36626-36685,36810-36923,37025-37061 NOTE DR750333 DR262752 DR262754 DR262751 DN604658 EL069143 EH900352 EH808438 HITS BX839544 [GenBank] [Order] TYPE GSLT cDNA EVAL e-140 LOCN Exon COOR C/35776-35908,36624-36685,36809-36920,37022-37204,37374-37396,37567-37826 HITS BX840279 [GenBank] TYPE ESTs EVAL e-104 LOCN Exon COOR C/35820-35965,36627-36685,36809-36920,37022-37204,37567-37757 HITS BX840279 [GenBank] [Order] TYPE GSLT cDNA EVAL e-104 LOCN Exon COOR C/35820-35965,36627-36685,36809-36920,37022-37204,37374-37396,37567-37757 HITS EG465569 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/35859-35965,36626-36685,36810-36920,37022-37203,37373-37779 NOTE EG517068 EG517069 EH811528 HITS BX839544 [GenBank] TYPE ESTs EVAL e-140 LOCN Exon COOR C/36624-36685,36809-36920,37022-37204,37567-37826 NOTE AV528276 AV821864 EL210103 ES162100 EL011803 HITS GATCTCCCCAAACATGA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR5 COOR W/37135-37151 NOTE 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 HITS GATCTCTGTTTGGCTGC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 1000-Promotor COOR C/37501-37517 NOTE 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 CODE At1g01060 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr1 TITL AT1G01060.3 CDS gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6 gene LHY function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process response to auxin stimulus|GO:0009733|16463103|IEP go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP go_process response to gibberellin stimulus|GO:0009739|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process regulation of circadian rhythm|GO:0042752|12007421|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process response to cadmium ion|GO:0046686|16463103|IEP go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9657154|ISS product Homeodomain-like superfamily protein note LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01060.3p transcript_id AT1G01060.3 protein_id AT1G01060.3p transcript_id AT1G01060.3 COOR C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061 HITS BP781603 [GenBank] TYPE ESTs EVAL e-118 LOCN Exon COOR W/33379-33597,33989-34180 NOTE BP782731 BP790455 AV793100 BP787483 AV518592 HITS RAFL07-43-F02 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.10 LOCN Exon COOR C/33379-33589,33981-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37111 HITS AV439916 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33730-34254 NOTE BP604428 BP611805 AV786398 AV792580 AV805408 AV809310 AV816640 BP783401 EH965397 BP785164 HITS AV519732 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33736-34312 NOTE AV794517 AA650979 EH922478 BP793781 AV519727 HITS AJ006404 [GenBank] TYPE Community cDNA EVAL 97.86 LOCN Exon COOR C/33741-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37203,37373-37398,37569-37685 HITS AV782430 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33743-34329 NOTE EH897895 HITS RAFL04-17-F21 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL 0.0 LOCN Exon COOR C/33743-33968,33979-34329,34403-34533 HITS RAFL04-17-F21 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.38 LOCN Exon COOR C/33743-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37203,37373-37779 HITS EG520849 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33745-34330 NOTE EG520850 EH853476 AV807028 AV793959 HITS BX836221 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33770-34333,34405-34588 NOTE AV519209 HITS BX836221 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR W/33770-34333,34405-34588 HITS BX835664 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33794-34329,34403-34817 NOTE EL285160 EL206414 CF773267 EH957137 AI993521 AA713203 HITS BX835664 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR W/33794-34329,34403-34817 HITS BX817115 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/33923-34326,34400-35474,35567-35647,35730-35963,36626-36685,36810-36920,37022-37204,37374-37395,37567-37828 HITS DR750341 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33992-34326,34400-34979 NOTE EL310869 R30439 GH718137 DR750570 EL098580 EL221576 EL071273 EL201800 EH906782 GH718138 EH968369 HITS AY519507 [GenBank] TYPE Community cDNA EVAL 99.90 LOCN Exon COOR C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061 HITS PYAt1g01060 [Seq] [About Peking Yale TF] [Order from ABRC] (ORF amplified by RT-PCR and cloned into the Gateway( TM) system; 5' and 3' end sequencing has been performed on this clone.) TYPE PY TF EVAL 0.0 LOCN Exon COOR C/33995-34326,34400-35474,35567-35647,35730-35965,36626-36685,36810-36923,37025-37061 HITS GATCGGTGTTGGAACAT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/34141-34157 NOTE 0 47 0 0 0 15 0 0 115 11 0 0 0 105 1 0 18 HITS 261569_at [gAtlas] TYPE Affy Probes EVAL e-146 LOCN Exon COOR C/34174-34326,34400-34660 HITS AV442073 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/34686-35172 HITS DR262753 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/34740-35469 NOTE AV525957 DR262755 EL125752 EL269840 EL187904 HITS GATCAAAACTTGGCTTC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/34762-34778 NOTE 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 HITS GATCTTGCAGAGCTGTG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/34775-34791 NOTE 0 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 HITS DR750340 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/35110-35474,35567-35647,35730-35965,36626-36685,36810-36923,37025-37061 NOTE DR750333 DR262752 DR262754 DR262751 DN604658 EL069143 EH900352 EH808438 HITS BX839544 [GenBank] [Order] TYPE GSLT cDNA EVAL e-140 LOCN Exon COOR C/35776-35908,36624-36685,36809-36920,37022-37204,37374-37396,37567-37826 HITS BX840279 [GenBank] TYPE ESTs EVAL e-104 LOCN Exon COOR C/35820-35965,36627-36685,36809-36920,37022-37204,37567-37757 HITS BX840279 [GenBank] [Order] TYPE GSLT cDNA EVAL e-104 LOCN Exon COOR C/35820-35965,36627-36685,36809-36920,37022-37204,37374-37396,37567-37757 HITS EG465569 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/35859-35965,36626-36685,36810-36920,37022-37203,37373-37779 NOTE EG517068 EG517069 EH811528 HITS BX839544 [GenBank] TYPE ESTs EVAL e-140 LOCN Exon COOR C/36624-36685,36809-36920,37022-37204,37567-37826 NOTE AV528276 AV821864 EL210103 ES162100 EL011803 HITS GATCTCCCCAAACATGA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR5 COOR W/37135-37151 NOTE 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 HITS GATCTCTGTTTGGCTGC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 1000-Promotor COOR C/37501-37517 NOTE 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 CODE At1g01060 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr1 TITL AT1G01060.4 CDS gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6 gene LHY function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process response to auxin stimulus|GO:0009733|16463103|IEP go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP go_process response to gibberellin stimulus|GO:0009739|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process regulation of circadian rhythm|GO:0042752|12007421|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process response to cadmium ion|GO:0046686|16463103|IEP go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9657154|ISS product Homeodomain-like superfamily protein note LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2567 Blast hits to 2041 proteins in 275 species: Archae - 2; Bacteria - 252; Metazoa - 294; Fungi - 166; Plants - 1044; Viruses - 30; Other Eukaryotes - 779 (source: NCBI BLink). protein_id AT1G01060.4p transcript_id AT1G01060.4 protein_id AT1G01060.4p transcript_id AT1G01060.4 COOR C/33992-34327,34401-35471,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061 HITS BP781603 [GenBank] TYPE ESTs EVAL e-118 LOCN Exon COOR W/33379-33597,33989-34180 NOTE BP782731 BP790455 AV793100 BP787483 AV518592 HITS RAFL07-43-F02 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.10 LOCN Exon COOR C/33379-33589,33981-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37111 HITS AV439916 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33730-34254 NOTE BP604428 BP611805 AV786398 AV792580 AV805408 AV809310 AV816640 BP783401 EH965397 BP785164 HITS AV519732 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33736-34312 NOTE AV794517 AA650979 EH922478 BP793781 AV519727 HITS AJ006404 [GenBank] TYPE Community cDNA EVAL 97.86 LOCN Exon COOR C/33741-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37203,37373-37398,37569-37685 HITS AV782430 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33743-34329 NOTE EH897895 HITS RAFL04-17-F21 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL 0.0 LOCN Exon COOR C/33743-33968,33979-34329,34403-34533 HITS RAFL04-17-F21 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.38 LOCN Exon COOR C/33743-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37203,37373-37779 HITS EG520849 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33745-34330 NOTE EG520850 EH853476 AV807028 AV793959 HITS BX836221 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33770-34333,34405-34588 NOTE AV519209 HITS BX836221 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR W/33770-34333,34405-34588 HITS BX835664 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33794-34329,34403-34817 NOTE EL285160 EL206414 CF773267 EH957137 AI993521 AA713203 HITS BX835664 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR W/33794-34329,34403-34817 HITS BX817115 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/33923-34326,34400-35474,35567-35647,35730-35963,36626-36685,36810-36920,37022-37204,37374-37395,37567-37828 HITS DR750341 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33992-34326,34400-34979 NOTE EL310869 R30439 GH718137 DR750570 EL098580 EL221576 EL071273 EL201800 EH906782 GH718138 EH968369 HITS AY519507 [GenBank] TYPE Community cDNA EVAL 99.90 LOCN Exon COOR C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061 HITS PYAt1g01060 [Seq] [About Peking Yale TF] [Order from ABRC] (ORF amplified by RT-PCR and cloned into the Gateway( TM) system; 5' and 3' end sequencing has been performed on this clone.) TYPE PY TF EVAL 0.0 LOCN Exon COOR C/33995-34326,34400-35474,35567-35647,35730-35965,36626-36685,36810-36923,37025-37061 HITS GATCGGTGTTGGAACAT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/34141-34157 NOTE 0 47 0 0 0 15 0 0 115 11 0 0 0 105 1 0 18 HITS 261569_at [gAtlas] TYPE Affy Probes EVAL e-146 LOCN Exon COOR C/34174-34326,34400-34660 HITS AV442073 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/34686-35172 HITS DR262753 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/34740-35469 NOTE AV525957 DR262755 EL125752 EL269840 EL187904 HITS GATCAAAACTTGGCTTC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/34762-34778 NOTE 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 HITS GATCTTGCAGAGCTGTG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/34775-34791 NOTE 0 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 HITS DR750340 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/35110-35474,35567-35647,35730-35965,36626-36685,36810-36923,37025-37061 NOTE DR750333 DR262752 DR262754 DR262751 DN604658 EL069143 EH900352 EH808438 HITS BX839544 [GenBank] [Order] TYPE GSLT cDNA EVAL e-140 LOCN Exon COOR C/35776-35908,36624-36685,36809-36920,37022-37204,37374-37396,37567-37826 HITS BX840279 [GenBank] TYPE ESTs EVAL e-104 LOCN Exon COOR C/35820-35965,36627-36685,36809-36920,37022-37204,37567-37757 HITS BX840279 [GenBank] [Order] TYPE GSLT cDNA EVAL e-104 LOCN Exon COOR C/35820-35965,36627-36685,36809-36920,37022-37204,37374-37396,37567-37757 HITS EG465569 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/35859-35965,36626-36685,36810-36920,37022-37203,37373-37779 NOTE EG517068 EG517069 EH811528 HITS BX839544 [GenBank] TYPE ESTs EVAL e-140 LOCN Exon COOR C/36624-36685,36809-36920,37022-37204,37567-37826 NOTE AV528276 AV821864 EL210103 ES162100 EL011803 HITS GATCTCCCCAAACATGA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR5 COOR W/37135-37151 NOTE 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 HITS GATCTCTGTTTGGCTGC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 1000-Promotor COOR C/37501-37517 NOTE 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 CODE At1g01060 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr1 TITL AT1G01060.5 CDS gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6 gene LHY function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process response to auxin stimulus|GO:0009733|16463103|IEP go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP go_process response to gibberellin stimulus|GO:0009739|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process regulation of circadian rhythm|GO:0042752|12007421|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process response to cadmium ion|GO:0046686|16463103|IEP go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9657154|ISS product Homeodomain-like superfamily protein note LATE ELONGATED HYPOCOTYL (LHY); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1). protein_id AT1G01060.5p transcript_id AT1G01060.5 protein_id AT1G01060.5p transcript_id AT1G01060.5 COOR C/33992-34327,34401-35474,35567-35647,35730-35999,36090-36171,36624-36685,36810-36836 HITS BP781603 [GenBank] TYPE ESTs EVAL e-118 LOCN Exon COOR W/33379-33597,33989-34180 NOTE BP782731 BP790455 AV793100 BP787483 AV518592 HITS RAFL07-43-F02 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.10 LOCN Exon COOR C/33379-33589,33981-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37111 HITS AV439916 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33730-34254 NOTE BP604428 BP611805 AV786398 AV792580 AV805408 AV809310 AV816640 BP783401 EH965397 BP785164 HITS AV519732 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33736-34312 NOTE AV794517 AA650979 EH922478 BP793781 AV519727 HITS AJ006404 [GenBank] TYPE Community cDNA EVAL 97.86 LOCN Exon COOR C/33741-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37203,37373-37398,37569-37685 HITS AV782430 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33743-34329 NOTE EH897895 HITS RAFL04-17-F21 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL 0.0 LOCN Exon COOR C/33743-33968,33979-34329,34403-34533 HITS RAFL04-17-F21 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.38 LOCN Exon COOR C/33743-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37203,37373-37779 HITS EG520849 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33745-34330 NOTE EG520850 EH853476 AV807028 AV793959 HITS BX836221 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33770-34333,34405-34588 NOTE AV519209 HITS BX836221 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR W/33770-34333,34405-34588 HITS BX835664 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33794-34329,34403-34817 NOTE EL285160 EL206414 CF773267 EH957137 AI993521 AA713203 HITS BX835664 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR W/33794-34329,34403-34817 HITS BX817115 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/33923-34326,34400-35474,35567-35647,35730-35963,36626-36685,36810-36920,37022-37204,37374-37395,37567-37828 HITS DR750341 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/33992-34326,34400-34979 NOTE EL310869 R30439 GH718137 DR750570 EL098580 EL221576 EL071273 EL201800 EH906782 GH718138 EH968369 HITS AY519507 [GenBank] TYPE Community cDNA EVAL 99.90 LOCN Exon COOR C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061 HITS PYAt1g01060 [Seq] [About Peking Yale TF] [Order from ABRC] (ORF amplified by RT-PCR and cloned into the Gateway( TM) system; 5' and 3' end sequencing has been performed on this clone.) TYPE PY TF EVAL 0.0 LOCN Exon COOR C/33995-34326,34400-35474,35567-35647,35730-35965,36626-36685,36810-36923,37025-37061 HITS GATCGGTGTTGGAACAT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/34141-34157 NOTE 0 47 0 0 0 15 0 0 115 11 0 0 0 105 1 0 18 HITS 261569_at [gAtlas] TYPE Affy Probes EVAL e-146 LOCN Exon COOR C/34174-34326,34400-34660 HITS AV442073 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/34686-35172 HITS DR262753 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/34740-35469 NOTE AV525957 DR262755 EL125752 EL269840 EL187904 HITS GATCAAAACTTGGCTTC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/34762-34778 NOTE 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 HITS GATCTTGCAGAGCTGTG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/34775-34791 NOTE 0 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 HITS DR750340 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/35110-35474,35567-35647,35730-35965,36626-36685,36810-36923,37025-37061 NOTE DR750333 DR262752 DR262754 DR262751 DN604658 EL069143 EH900352 EH808438 HITS BX839544 [GenBank] [Order] TYPE GSLT cDNA EVAL e-140 LOCN Exon COOR C/35776-35908,36624-36685,36809-36920,37022-37204,37374-37396,37567-37826 HITS BX840279 [GenBank] TYPE ESTs EVAL e-104 LOCN Exon COOR C/35820-35965,36627-36685,36809-36920,37022-37204,37567-37757 HITS BX840279 [GenBank] [Order] TYPE GSLT cDNA EVAL e-104 LOCN Exon COOR C/35820-35965,36627-36685,36809-36920,37022-37204,37374-37396,37567-37757 HITS EG465569 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/35859-35965,36626-36685,36810-36920,37022-37203,37373-37779 NOTE EG517068 EG517069 EH811528 HITS BX839544 [GenBank] TYPE ESTs EVAL e-140 LOCN Exon COOR C/36624-36685,36809-36920,37022-37204,37567-37826 NOTE AV528276 AV821864 EL210103 ES162100 EL011803 HITS GATCTCCCCAAACATGA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR5 COOR W/37135-37151 NOTE 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 HITS GATCTCTGTTTGGCTGC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 1000-Promotor COOR C/37501-37517 NOTE 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0