CODE At1g01040 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr1 TITL AT1G01040.1 CDS gene_syn ABNORMAL SUSPENSOR 1, ASU1, ATDCL1, CAF, CARPEL FACTORY, DCL1, DICER-LIKE 1, EMB60, EMB76, EMBRYO DEFECTIVE 60, EMBRYO DEFECTIVE 76, SHORT INTEGUMENTS 1, SIN1, SUS1, SUSPENSOR 1, T25K16.4, T25K16_4, dicer-like 1 gene DCL1 function Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. go_component nucleus|GO:0005634|15821876|IDA go_component nucleus|GO:0005634|17369351|IDA go_component nuclear dicing body|GO:0010445|17442570|IDA go_process cytokinesis|GO:0000910|10556049|IMP go_process RNA processing|GO:0006396|12225663|ISS go_process virus induced gene silencing|GO:0009616|17090584|IMP go_process embryonic pattern specification|GO:0009880|8787738|IMP go_process flower development|GO:0009908|8787738|TAS go_process suspensor development|GO:0010098||IMP go_process vegetative to reproductive phase transition of meristem|GO:0010228|8787738|IMP go_process production of ta-siRNAs involved in RNA interference|GO:0010267|16699516|IMP go_process production of lsiRNA involved in RNA interference|GO:0010599|18003861|IMP go_process production of siRNA involved in RNA interference|GO:0030422|17558406|IMP go_process primary microRNA processing|GO:0031053|16144699|TAS go_process production of miRNAs involved in gene silencing by miRNA|GO:0035196|16810317|IGI go_process mRNA cleavage involved in gene silencing by miRNA|GO:0035279|15851028|IMP go_function double-stranded RNA binding|GO:0003725|15821876|IDA go_function ribonuclease III activity|GO:0004525||ISS go_function protein binding|GO:0005515|15821876|IPI go_function ATP-dependent helicase activity|GO:0008026||ISS product dicer-like 1 note dicer-like 1 (DCL1); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Dicer double-stranded RNA-binding fold (InterPro:IPR005034); BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.2); Has 21958 Blast hits to 17420 proteins in 2982 species: Archae - 328; Bacteria - 11461; Metazoa - 3615; Fungi - 1668; Plants - 1373; Viruses - 45; Other Eukaryotes - 3468 (source: NCBI BLink). protein_id AT1G01040.1p transcript_id AT1G01040.1 protein_id AT1G01040.1p transcript_id AT1G01040.1 COOR W/23519-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27533,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31079 HITS AF292941 [GenBank] TYPE Community DNA EVAL 99.93 LOCN Exon COOR W/23066-31204 HITS AF292940 [GenBank] TYPE Community cDNA EVAL 99.89 LOCN Exon COOR W/23146-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27533,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31153 HITS JN661701 [GenBank] TYPE Community cDNA EVAL 100.00 LOCN Exon COOR W/23146-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31227 HITS JN661702 [GenBank] TYPE Community cDNA EVAL 100.00 LOCN Exon COOR W/23146-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27533,27687-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31227 HITS AF187317 [GenBank] TYPE Community cDNA EVAL 99.97 LOCN Exon COOR W/23510-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27533,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31155 HITS CATGAAAGAGATGT [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/24152-24165 HITS ASRP16635 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Exon COOR W/24315-24336 HITS CATGTTTGTATTCT [About SAGE] TYPE SAGE Target EVAL 100 LOCN Intron COOR W/24470-24483 HITS GATCCGTAATCAAACTT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/24553-24569 NOTE 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 HITS CATGTATAATGTCA [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/27431-27444 HITS GATCACTAAAGCATCTC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/27659-27675 NOTE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 HITS ASRP200726 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Exon COOR W/27833-27854 HITS GATCCCATGGTGTCGTG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/27871-27887 NOTE 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 HITS CATCCTTCGATGTTGTG [About MPSS sRNA] TYPE MPSS sRNA Contig EVAL 100.00 LOCN Exon COOR W/28152-28168 NOTE 1, +0 4 0 0 0 HITS RAFL07-36-P21 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 98.54 LOCN Exon COOR W/28521-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31183 HITS ASRP159401 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Intron COOR W/28533-28556 HITS ASRP186012 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Intron COOR W/28634-28655 HITS BU636534 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/28909-29076,29158-29714 HITS ASRP87688 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Exon COOR C/28969-28989 HITS GATCCGCCTGGATATAT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/29372-29388 NOTE 0 0 0 0 0 2 0 0 10 0 0 0 0 1 0 0 0 HITS H36434 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/29496-29843 HITS ASRP174661 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Exon COOR W/29599-29622 HITS ES185316 [GenBank] TYPE ESTs EVAL 1e-25 LOCN Exon COOR W/29876-29942 HITS GATCTGTTAACCGACCA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/29948-29964 NOTE 0 0 0 0 0 2 0 0 0 0 6 0 0 0 0 0 0 HITS ASRP90614 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Exon COOR W/29951-29970 HITS GATCTTCGAGCTGCAGC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/29961-29977 NOTE 0 0 1 0 0 2 6 0 2 0 0 0 0 0 0 5 0 HITS EH948322 [GenBank] TYPE ESTs EVAL 7e-28 LOCN Exon COOR W/30253-30314,30413-30442 HITS AI996152 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/30437-30816,30902-31161 NOTE EH971167 ES104193 HITS 261584_at [gAtlas] TYPE Affy Probes EVAL 0.0 LOCN Exon COOR W/30443-30816,30902-31064 HITS GATCCTCTCCCGCATTA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/30694-30710 NOTE 0 0 0 0 0 1 3 4 2 0 0 0 0 0 0 0 0 HITS BP789125 [GenBank] TYPE ESTs EVAL e-159 LOCN Exon COOR C/30700-30814,30900-31183 NOTE EH988836 EL096532 EL137132 EL281260 HITS GATCAAGGCGAGAATGA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/30707-30723 NOTE 1 3 3 0 0 12 4 5 3 2 0 0 0 0 0 4 41 HITS BP787533 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/30707-30814,30900-31227 NOTE AA651141 EL120669 EG522515 EH902174 HITS CATGCAAAGAGATT [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/30927-30940 HITS GATCTGTTGTTATTCGA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR W/31156-31172 NOTE 19 22 13 11 50 12 19 17 19 22 4 0 0 12 0 58 37 HITS BP655894 [GenBank] TYPE ESTs EVAL e-135 LOCN 300-UTR3 COOR W/31170-31424,31521-31602 HITS RAFL08-11-E15 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 98.82 LOCN 300-UTR3 COOR C/31183-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670,33029-33114 HITS AV535286 [GenBank] TYPE ESTs EVAL e-134 LOCN 300-UTR3 COOR W/31184-31424,31521-31602,31693-31815,31935-32000,32090-32120 NOTE AV781745 AV787299 HITS R13796 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 100.00 LOCN 300-UTR3 COOR C/31186-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670,33029-33114 NOTE AY052717 HITS RAFL06-74-O18 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-108 LOCN 300-UTR3 COOR C/31188-31424,31521-31602,31693-31776 HITS AY085015 [GenBank] TYPE Community cDNA EVAL 99.90 LOCN 300-UTR3 COOR C/31188-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670,33029-33148 HITS DR380507 [GenBank] TYPE ESTs EVAL e-116 LOCN 300-UTR3 COOR C/31191-31424,31521-31602,31693-31815,31935-31996,32087-32193 NOTE AV806514 BP568979 BP571785 BP575972 AV815743 Z29202 BP783219 EH866522 AV783898 BP563653 BP629851 ES210801 ES159107 EH901232 ES098400 AI100063 EH830906 DR373797 AI994042 AI994013 AV561492 HITS R14690 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 99.78 LOCN 300-UTR3 COOR C/31195-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670,33029-33117 NOTE AY057668 HITS RAFL09-46-O10 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-122 LOCN 300-UTR3 COOR C/31197-31424,31521-31602,31693-31776 HITS RAFL05-14-F05 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-114 LOCN 300-UTR3 COOR C/31209-31424,31521-31602,31693-31815,31935-31997,32087-32197,32284-32348,32432-32460 HITS R16094 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 99.78 LOCN 300-UTR3 COOR C/31209-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670,33029-33118 NOTE AY065201 HITS U16094 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP Gateway Clone EVAL 100.00 LOCN 300-UTR3 COOR C/31216-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670 NOTE U16094 AY081555 pENTR-TOPO HITS AV537463 [GenBank] TYPE ESTs EVAL 2e-75 LOCN 300-UTR3 COOR W/31270-31424,31521-31602,31693-31815,31935-31997,32087-32197,32284-32348 NOTE AV538108 HITS BX841824 [GenBank] [Order] TYPE GSLT cDNA EVAL 3e-63 LOCN 300-UTR3 COOR C/31285-31424,31521-31602,31693-31815,31935-31997,32087-32197,32284-32348,32432-32458,32546-32672,33032-33107 HITS GATCCTAATTGATATTA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR C/31296-31312 NOTE 202 374 163 359 201 0 0 0 3 0 0 0 0 1 0 0 2 CODE At1g01040 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr1 TITL AT1G01040.2 CDS gene_syn ABNORMAL SUSPENSOR 1, ASU1, ATDCL1, CAF, CARPEL FACTORY, DCL1, DICER-LIKE 1, EMB60, EMB76, EMBRYO DEFECTIVE 60, EMBRYO DEFECTIVE 76, SHORT INTEGUMENTS 1, SIN1, SUS1, SUSPENSOR 1, T25K16.4, T25K16_4, dicer-like 1 gene DCL1 function Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. go_component nucleus|GO:0005634|15821876|IDA go_component nucleus|GO:0005634|17369351|IDA go_component nuclear dicing body|GO:0010445|17442570|IDA go_process cytokinesis|GO:0000910|10556049|IMP go_process RNA processing|GO:0006396|12225663|ISS go_process virus induced gene silencing|GO:0009616|17090584|IMP go_process embryonic pattern specification|GO:0009880|8787738|IMP go_process flower development|GO:0009908|8787738|TAS go_process suspensor development|GO:0010098||IMP go_process vegetative to reproductive phase transition of meristem|GO:0010228|8787738|IMP go_process production of ta-siRNAs involved in RNA interference|GO:0010267|16699516|IMP go_process production of lsiRNA involved in RNA interference|GO:0010599|18003861|IMP go_process production of siRNA involved in RNA interference|GO:0030422|17558406|IMP go_process primary microRNA processing|GO:0031053|16144699|TAS go_process production of miRNAs involved in gene silencing by miRNA|GO:0035196|16810317|IGI go_process mRNA cleavage involved in gene silencing by miRNA|GO:0035279|15851028|IMP go_function double-stranded RNA binding|GO:0003725|15821876|IDA go_function ribonuclease III activity|GO:0004525||ISS go_function protein binding|GO:0005515|15821876|IPI go_function ATP-dependent helicase activity|GO:0008026||ISS product dicer-like 1 note dicer-like 1 (DCL1); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.1). protein_id AT1G01040.2p transcript_id AT1G01040.2 protein_id AT1G01040.2p transcript_id AT1G01040.2 COOR W/23519-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27536,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31079 HITS AF292941 [GenBank] TYPE Community DNA EVAL 99.93 LOCN Exon COOR W/23066-31204 HITS AF292940 [GenBank] TYPE Community cDNA EVAL 99.89 LOCN Exon COOR W/23146-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27533,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31153 HITS JN661701 [GenBank] TYPE Community cDNA EVAL 100.00 LOCN Exon COOR W/23146-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31227 HITS JN661702 [GenBank] TYPE Community cDNA EVAL 100.00 LOCN Exon COOR W/23146-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27533,27687-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31227 HITS AF187317 [GenBank] TYPE Community cDNA EVAL 99.97 LOCN Exon COOR W/23510-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27533,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31155 HITS CATGAAAGAGATGT [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/24152-24165 HITS ASRP16635 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Exon COOR W/24315-24336 HITS CATGTTTGTATTCT [About SAGE] TYPE SAGE Target EVAL 100 LOCN Intron COOR W/24470-24483 HITS GATCCGTAATCAAACTT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/24553-24569 NOTE 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 HITS CATGTATAATGTCA [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/27431-27444 HITS GATCACTAAAGCATCTC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/27659-27675 NOTE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 HITS ASRP200726 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Exon COOR W/27833-27854 HITS GATCCCATGGTGTCGTG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/27871-27887 NOTE 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 HITS CATCCTTCGATGTTGTG [About MPSS sRNA] TYPE MPSS sRNA Contig EVAL 100.00 LOCN Exon COOR W/28152-28168 NOTE 1, +0 4 0 0 0 HITS RAFL07-36-P21 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 98.54 LOCN Exon COOR W/28521-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31183 HITS ASRP159401 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Intron COOR W/28533-28556 HITS ASRP186012 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Intron COOR W/28634-28655 HITS BU636534 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/28909-29076,29158-29714 HITS ASRP87688 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Exon COOR C/28969-28989 HITS GATCCGCCTGGATATAT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/29372-29388 NOTE 0 0 0 0 0 2 0 0 10 0 0 0 0 1 0 0 0 HITS H36434 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/29496-29843 HITS ASRP174661 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Exon COOR W/29599-29622 HITS ES185316 [GenBank] TYPE ESTs EVAL 1e-25 LOCN Exon COOR W/29876-29942 HITS GATCTGTTAACCGACCA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/29948-29964 NOTE 0 0 0 0 0 2 0 0 0 0 6 0 0 0 0 0 0 HITS ASRP90614 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Exon COOR W/29951-29970 HITS GATCTTCGAGCTGCAGC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/29961-29977 NOTE 0 0 1 0 0 2 6 0 2 0 0 0 0 0 0 5 0 HITS EH948322 [GenBank] TYPE ESTs EVAL 7e-28 LOCN Exon COOR W/30253-30314,30413-30442 HITS AI996152 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/30437-30816,30902-31161 NOTE EH971167 ES104193 HITS 261584_at [gAtlas] TYPE Affy Probes EVAL 0.0 LOCN Exon COOR W/30443-30816,30902-31064 HITS GATCCTCTCCCGCATTA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/30694-30710 NOTE 0 0 0 0 0 1 3 4 2 0 0 0 0 0 0 0 0 HITS BP789125 [GenBank] TYPE ESTs EVAL e-159 LOCN Exon COOR C/30700-30814,30900-31183 NOTE EH988836 EL096532 EL137132 EL281260 HITS GATCAAGGCGAGAATGA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/30707-30723 NOTE 1 3 3 0 0 12 4 5 3 2 0 0 0 0 0 4 41 HITS BP787533 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/30707-30814,30900-31227 NOTE AA651141 EL120669 EG522515 EH902174 HITS CATGCAAAGAGATT [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/30927-30940 HITS GATCTGTTGTTATTCGA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR W/31156-31172 NOTE 19 22 13 11 50 12 19 17 19 22 4 0 0 12 0 58 37 HITS BP655894 [GenBank] TYPE ESTs EVAL e-135 LOCN 300-UTR3 COOR W/31170-31424,31521-31602 HITS RAFL08-11-E15 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 98.82 LOCN 300-UTR3 COOR C/31183-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670,33029-33114 HITS AV535286 [GenBank] TYPE ESTs EVAL e-134 LOCN 300-UTR3 COOR W/31184-31424,31521-31602,31693-31815,31935-32000,32090-32120 NOTE AV781745 AV787299 HITS R13796 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 100.00 LOCN 300-UTR3 COOR C/31186-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670,33029-33114 NOTE AY052717 HITS RAFL06-74-O18 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-108 LOCN 300-UTR3 COOR C/31188-31424,31521-31602,31693-31776 HITS AY085015 [GenBank] TYPE Community cDNA EVAL 99.90 LOCN 300-UTR3 COOR C/31188-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670,33029-33148 HITS DR380507 [GenBank] TYPE ESTs EVAL e-116 LOCN 300-UTR3 COOR C/31191-31424,31521-31602,31693-31815,31935-31996,32087-32193 NOTE AV806514 BP568979 BP571785 BP575972 AV815743 Z29202 BP783219 EH866522 AV783898 BP563653 BP629851 ES210801 ES159107 EH901232 ES098400 AI100063 EH830906 DR373797 AI994042 AI994013 AV561492 HITS R14690 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 99.78 LOCN 300-UTR3 COOR C/31195-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670,33029-33117 NOTE AY057668 HITS RAFL09-46-O10 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-122 LOCN 300-UTR3 COOR C/31197-31424,31521-31602,31693-31776 HITS RAFL05-14-F05 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-114 LOCN 300-UTR3 COOR C/31209-31424,31521-31602,31693-31815,31935-31997,32087-32197,32284-32348,32432-32460 HITS R16094 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 99.78 LOCN 300-UTR3 COOR C/31209-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670,33029-33118 NOTE AY065201 HITS U16094 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP Gateway Clone EVAL 100.00 LOCN 300-UTR3 COOR C/31216-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670 NOTE U16094 AY081555 pENTR-TOPO HITS AV537463 [GenBank] TYPE ESTs EVAL 2e-75 LOCN 300-UTR3 COOR W/31270-31424,31521-31602,31693-31815,31935-31997,32087-32197,32284-32348 NOTE AV538108 HITS BX841824 [GenBank] [Order] TYPE GSLT cDNA EVAL 3e-63 LOCN 300-UTR3 COOR C/31285-31424,31521-31602,31693-31815,31935-31997,32087-32197,32284-32348,32432-32458,32546-32672,33032-33107 HITS GATCCTAATTGATATTA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR C/31296-31312 NOTE 202 374 163 359 201 0 0 0 3 0 0 0 0 1 0 0 2