CLON RAFL09-16-O16[NCBI] [Order from RIKEN BRC] 
TYPE RIKEN FL cDNA
CHRO chr1
EVAL 99.27
COOR C/47483-47982,48075-48852,48936-49279

HITS At1g01080[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01080.1 CDS gene_syn T25K16.19, T25K16_19 go_component nucleus|GO:0005634|14617066|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, nucleus, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1); Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819; Bacteria - 303967; Metazoa - 99035; Fungi - 14863; Plants - 31737; Viruses - 35534; Other Eukaryotes - 13112 (source: NCBI BLink). protein_id AT1G01080.1p transcript_id AT1G01080.1 protein_id AT1G01080.1p transcript_id AT1G01080.1 LOCN 1000-Promotor COOR C/45503-45559,45646-45954,46044-46145,46376-46789 HITS At1g01080[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01080.2 CDS gene_syn T25K16.19, T25K16_19 go_component chloroplast|GO:0009507|18431481|IDA go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01080.2p transcript_id AT1G01080.2 protein_id AT1G01080.2p transcript_id AT1G01080.2 LOCN 1000-Promotor COOR C/45503-45559,45646-45954,46044-46145,46373-46789 HITS At1g01090[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01090.1 CDS gene_syn PDH-E1 ALPHA, T25K16.8, T25K16_8, pyruvate dehydrogenase E1 alpha gene PDH-E1 ALPHA function pyruvate dehydrogenase E1 alpha subunit go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process glycolysis|GO:0006096||IEA go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_component plastid|GO:0009536|9393637|ISS go_process metabolic process|GO:0008152||ISS go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739|9393637|ISS go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739||ISS product pyruvate dehydrogenase E1 alpha note pyruvate dehydrogenase E1 alpha (PDH-E1 ALPHA); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity; INVOLVED IN: oxidation reduction, glycolysis, metabolic process; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017), Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y (InterPro:IPR017597); BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase complex E1 alpha subunit (TAIR:AT1G59900.1); Has 10065 Blast hits to 10059 proteins in 1888 species: Archae - 130; Bacteria - 6136; Metazoa - 517; Fungi - 241; Plants - 224; Viruses - 0; Other Eukaryotes - 2817 (source: NCBI BLink). protein_id AT1G01090.1p transcript_id AT1G01090.1 protein_id AT1G01090.1p transcript_id AT1G01090.1 LOCN Exon COOR C/47705-47982,48075-48852,48936-49166 CLON RAFL09-16-O16[NCBI] [Order from RIKEN BRC] TYPE RIKEN EST CHRO chr1 EVAL e-170 COOR C/47513-47890 HITS At1g01080[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01080.1 CDS gene_syn T25K16.19, T25K16_19 go_component nucleus|GO:0005634|14617066|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, nucleus, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1); Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819; Bacteria - 303967; Metazoa - 99035; Fungi - 14863; Plants - 31737; Viruses - 35534; Other Eukaryotes - 13112 (source: NCBI BLink). protein_id AT1G01080.1p transcript_id AT1G01080.1 protein_id AT1G01080.1p transcript_id AT1G01080.1 LOCN 1000-Promotor COOR C/45503-45559,45646-45954,46044-46145,46376-46789 HITS At1g01080[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01080.2 CDS gene_syn T25K16.19, T25K16_19 go_component chloroplast|GO:0009507|18431481|IDA go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01080.2p transcript_id AT1G01080.2 protein_id AT1G01080.2p transcript_id AT1G01080.2 LOCN 1000-Promotor COOR C/45503-45559,45646-45954,46044-46145,46373-46789 HITS At1g01090[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01090.1 CDS gene_syn PDH-E1 ALPHA, T25K16.8, T25K16_8, pyruvate dehydrogenase E1 alpha gene PDH-E1 ALPHA function pyruvate dehydrogenase E1 alpha subunit go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process glycolysis|GO:0006096||IEA go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_component plastid|GO:0009536|9393637|ISS go_process metabolic process|GO:0008152||ISS go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739|9393637|ISS go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739||ISS product pyruvate dehydrogenase E1 alpha note pyruvate dehydrogenase E1 alpha (PDH-E1 ALPHA); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity; INVOLVED IN: oxidation reduction, glycolysis, metabolic process; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017), Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y (InterPro:IPR017597); BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase complex E1 alpha subunit (TAIR:AT1G59900.1); Has 10065 Blast hits to 10059 proteins in 1888 species: Archae - 130; Bacteria - 6136; Metazoa - 517; Fungi - 241; Plants - 224; Viruses - 0; Other Eukaryotes - 2817 (source: NCBI BLink). protein_id AT1G01090.1p transcript_id AT1G01090.1 protein_id AT1G01090.1p transcript_id AT1G01090.1 LOCN Exon COOR C/47705-47982,48075-48852,48936-49166