CLON RAFL07-43-F02[NCBI] [Order from RIKEN BRC] 
TYPE RIKEN FL cDNA
CHRO chr1
EVAL 99.10
COOR C/33379-33589,33981-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37111

HITS At1g01050[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01050.1 CDS gene_syn AtPPa1, PPa1, T25K16.5, T25K16_5, pyrophosphorylase 1 gene PPa1 function Encodes a soluble protein with inorganic pyrophosphatase activity that is highly specific for Mg-inorganic pyrophosphate. go_process phosphate metabolic process|GO:0006796||IEA go_component nucleus|GO:0005634|15610358|IDA go_component cytoplasm|GO:0005737|15610358|IDA go_component membrane|GO:0016020||ISS go_process metabolic process|GO:0008152||ISS go_function inorganic diphosphatase activity|GO:0004427||IDA product pyrophosphorylase 1 note pyrophosphorylase 1 (PPa1); FUNCTIONS IN: inorganic diphosphatase activity; INVOLVED IN: phosphate metabolic process, metabolic process; LOCATED IN: nucleus, membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: pyrophosphorylase 3 (TAIR:AT2G46860.1); Has 5987 Blast hits to 5987 proteins in 1845 species: Archae - 172; Bacteria - 4313; Metazoa - 247; Fungi - 261; Plants - 270; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink). protein_id AT1G01050.1p transcript_id AT1G01050.1 protein_id AT1G01050.1p transcript_id AT1G01050.1 LOCN 1000-Promotor COOR C/31382-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670 HITS At1g01060[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01060.1 CDS gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6 gene LHY function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process response to auxin stimulus|GO:0009733|16463103|IEP go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP go_process response to gibberellin stimulus|GO:0009739|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process regulation of circadian rhythm|GO:0042752|12007421|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process response to cadmium ion|GO:0046686|16463103|IEP go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9657154|ISS product Homeodomain-like superfamily protein note LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2; Bacteria - 257; Metazoa - 292; Fungi - 162; Plants - 1048; Viruses - 29; Other Eukaryotes - 679 (source: NCBI BLink). protein_id AT1G01060.1p transcript_id AT1G01060.1 protein_id AT1G01060.1p transcript_id AT1G01060.1 LOCN Exon COOR C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061 HITS At1g01060[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01060.2 CDS gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6 gene LHY function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process response to auxin stimulus|GO:0009733|16463103|IEP go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP go_process response to gibberellin stimulus|GO:0009739|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process regulation of circadian rhythm|GO:0042752|12007421|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process response to cadmium ion|GO:0046686|16463103|IEP go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9657154|ISS product Homeodomain-like superfamily protein note LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2; Bacteria - 257; Metazoa - 292; Fungi - 162; Plants - 1048; Viruses - 29; Other Eukaryotes - 679 (source: NCBI BLink). protein_id AT1G01060.2p transcript_id AT1G01060.2 protein_id AT1G01060.2p transcript_id AT1G01060.2 LOCN Exon COOR C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061 HITS At1g01060[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01060.3 CDS gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6 gene LHY function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process response to auxin stimulus|GO:0009733|16463103|IEP go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP go_process response to gibberellin stimulus|GO:0009739|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process regulation of circadian rhythm|GO:0042752|12007421|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process response to cadmium ion|GO:0046686|16463103|IEP go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9657154|ISS product Homeodomain-like superfamily protein note LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01060.3p transcript_id AT1G01060.3 protein_id AT1G01060.3p transcript_id AT1G01060.3 LOCN Exon COOR C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061 HITS At1g01060[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01060.4 CDS gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6 gene LHY function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process response to auxin stimulus|GO:0009733|16463103|IEP go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP go_process response to gibberellin stimulus|GO:0009739|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process regulation of circadian rhythm|GO:0042752|12007421|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process response to cadmium ion|GO:0046686|16463103|IEP go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9657154|ISS product Homeodomain-like superfamily protein note LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2567 Blast hits to 2041 proteins in 275 species: Archae - 2; Bacteria - 252; Metazoa - 294; Fungi - 166; Plants - 1044; Viruses - 30; Other Eukaryotes - 779 (source: NCBI BLink). protein_id AT1G01060.4p transcript_id AT1G01060.4 protein_id AT1G01060.4p transcript_id AT1G01060.4 LOCN Exon COOR C/33992-34327,34401-35471,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061 HITS At1g01060[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01060.5 CDS gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6 gene LHY function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 go_process response to salt stress|GO:0009651|16463103|IEP go_process response to ethylene stimulus|GO:0009723|16463103|IEP go_process response to auxin stimulus|GO:0009733|16463103|IEP go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP go_process response to gibberellin stimulus|GO:0009739|16463103|IEP go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP go_process regulation of circadian rhythm|GO:0042752|12007421|IMP go_process regulation of transcription|GO:0045449|11118137|TAS go_process response to cadmium ion|GO:0046686|16463103|IEP go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|9657154|ISS product Homeodomain-like superfamily protein note LATE ELONGATED HYPOCOTYL (LHY); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1). protein_id AT1G01060.5p transcript_id AT1G01060.5 protein_id AT1G01060.5p transcript_id AT1G01060.5 LOCN Exon COOR C/33992-34327,34401-35474,35567-35647,35730-35999,36090-36171,36624-36685,36810-36836