AtTome: Genome Express Database ( Aug. 2, 2016 )


CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] 
TYPE MPSS sRNA Contig
CHRO chr1
EVAL 100.00
COOR C/10915331-10915348
NOTE 2, +0 4 0 0 0, +1 4 0 0 0


CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] 
TYPE MPSS sRNA Contig
CHRO chr1
EVAL 100.00
COOR C/6743816-6743838
NOTE 3, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0

HITS At1g19480[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G19480.1 CDS gene_syn F18O14.25, F18O14_25 go_component chloroplast|GO:0009507||IEA go_process DNA repair|GO:0006281||IEA go_process base-excision repair|GO:0006284||IEA go_function catalytic activity|GO:0003824||IEA go_process base-excision repair|GO:0006284||ISS product DNA glycosylase superfamily protein note DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G75230.1); Has 4603 Blast hits to 4603 proteins in 1096 species: Archae - 62; Bacteria - 2357; Metazoa - 1; Fungi - 142; Plants - 80; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink). protein_id AT1G19480.1p transcript_id AT1G19480.1 protein_id AT1G19480.1p transcript_id AT1G19480.1 LOCN 1000-Promotor COOR W/6744520-6745649,6746126-6746144 HITS At1g19480[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G19480.2 CDS gene_syn F18O14.25, F18O14_25 go_component chloroplast|GO:0009507||IEA go_process DNA repair|GO:0006281||IEA go_process base-excision repair|GO:0006284||IEA go_function catalytic activity|GO:0003824||IEA go_process base-excision repair|GO:0006284||ISS product DNA glycosylase superfamily protein note DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G75230.1); Has 4597 Blast hits to 4597 proteins in 1093 species: Archae - 62; Bacteria - 2351; Metazoa - 1; Fungi - 142; Plants - 80; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink). protein_id AT1G19480.2p transcript_id AT1G19480.2 protein_id AT1G19480.2p transcript_id AT1G19480.2 LOCN 1000-Promotor COOR W/6744520-6745653 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/6743763-6743785 NOTE 3, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0 HITS At1g19480[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G19480.1 CDS gene_syn F18O14.25, F18O14_25 go_component chloroplast|GO:0009507||IEA go_process DNA repair|GO:0006281||IEA go_process base-excision repair|GO:0006284||IEA go_function catalytic activity|GO:0003824||IEA go_process base-excision repair|GO:0006284||ISS product DNA glycosylase superfamily protein note DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G75230.1); Has 4603 Blast hits to 4603 proteins in 1096 species: Archae - 62; Bacteria - 2357; Metazoa - 1; Fungi - 142; Plants - 80; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink). protein_id AT1G19480.1p transcript_id AT1G19480.1 protein_id AT1G19480.1p transcript_id AT1G19480.1 LOCN 1000-Promotor COOR W/6744520-6745649,6746126-6746144 HITS At1g19480[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G19480.2 CDS gene_syn F18O14.25, F18O14_25 go_component chloroplast|GO:0009507||IEA go_process DNA repair|GO:0006281||IEA go_process base-excision repair|GO:0006284||IEA go_function catalytic activity|GO:0003824||IEA go_process base-excision repair|GO:0006284||ISS product DNA glycosylase superfamily protein note DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G75230.1); Has 4597 Blast hits to 4597 proteins in 1093 species: Archae - 62; Bacteria - 2351; Metazoa - 1; Fungi - 142; Plants - 80; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink). protein_id AT1G19480.2p transcript_id AT1G19480.2 protein_id AT1G19480.2p transcript_id AT1G19480.2 LOCN 1000-Promotor COOR W/6744520-6745653 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/6743709-6743753 NOTE 6, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0, +12 2 0 0 0, +27 4 0 0 0, +28 1 0 0 0 HITS At1g19480[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G19480.1 CDS gene_syn F18O14.25, F18O14_25 go_component chloroplast|GO:0009507||IEA go_process DNA repair|GO:0006281||IEA go_process base-excision repair|GO:0006284||IEA go_function catalytic activity|GO:0003824||IEA go_process base-excision repair|GO:0006284||ISS product DNA glycosylase superfamily protein note DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G75230.1); Has 4603 Blast hits to 4603 proteins in 1096 species: Archae - 62; Bacteria - 2357; Metazoa - 1; Fungi - 142; Plants - 80; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink). protein_id AT1G19480.1p transcript_id AT1G19480.1 protein_id AT1G19480.1p transcript_id AT1G19480.1 LOCN 1000-Promotor COOR W/6744520-6745649,6746126-6746144 HITS At1g19480[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G19480.2 CDS gene_syn F18O14.25, F18O14_25 go_component chloroplast|GO:0009507||IEA go_process DNA repair|GO:0006281||IEA go_process base-excision repair|GO:0006284||IEA go_function catalytic activity|GO:0003824||IEA go_process base-excision repair|GO:0006284||ISS product DNA glycosylase superfamily protein note DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G75230.1); Has 4597 Blast hits to 4597 proteins in 1093 species: Archae - 62; Bacteria - 2351; Metazoa - 1; Fungi - 142; Plants - 80; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink). protein_id AT1G19480.2p transcript_id AT1G19480.2 protein_id AT1G19480.2p transcript_id AT1G19480.2 LOCN 1000-Promotor COOR W/6744520-6745653 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/6743574-6743591 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 HITS At1g19480[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G19480.1 CDS gene_syn F18O14.25, F18O14_25 go_component chloroplast|GO:0009507||IEA go_process DNA repair|GO:0006281||IEA go_process base-excision repair|GO:0006284||IEA go_function catalytic activity|GO:0003824||IEA go_process base-excision repair|GO:0006284||ISS product DNA glycosylase superfamily protein note DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G75230.1); Has 4603 Blast hits to 4603 proteins in 1096 species: Archae - 62; Bacteria - 2357; Metazoa - 1; Fungi - 142; Plants - 80; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink). protein_id AT1G19480.1p transcript_id AT1G19480.1 protein_id AT1G19480.1p transcript_id AT1G19480.1 LOCN 1000-Promotor COOR W/6744520-6745649,6746126-6746144 HITS At1g19480[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G19480.2 CDS gene_syn F18O14.25, F18O14_25 go_component chloroplast|GO:0009507||IEA go_process DNA repair|GO:0006281||IEA go_process base-excision repair|GO:0006284||IEA go_function catalytic activity|GO:0003824||IEA go_process base-excision repair|GO:0006284||ISS product DNA glycosylase superfamily protein note DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G75230.1); Has 4597 Blast hits to 4597 proteins in 1093 species: Archae - 62; Bacteria - 2351; Metazoa - 1; Fungi - 142; Plants - 80; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink). protein_id AT1G19480.2p transcript_id AT1G19480.2 protein_id AT1G19480.2p transcript_id AT1G19480.2 LOCN 1000-Promotor COOR W/6744520-6745653 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/6743444-6743461 NOTE 2, +0 4 0 0 0, +1 4 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/6743365-6743382 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/6743338-6743360 NOTE 3, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/6743285-6743302 NOTE 2, +0 4 0 0 0, +1 4 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/6743259-6743276 NOTE 2, +0 4 0 0 0, +1 4 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/6743232-6743254 NOTE 3, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/56250-56267 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 HITS At1g01115[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01115.1 CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). protein_id AT1G01115.1p transcript_id AT1G01115.1 protein_id AT1G01115.1p transcript_id AT1G01115.1 LOCN 1000-Promotor COOR W/56624-56740 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/56139-56167 NOTE 4, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0, +12 2 0 0 0 HITS At1g01115[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01115.1 CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). protein_id AT1G01115.1p transcript_id AT1G01115.1 protein_id AT1G01115.1p transcript_id AT1G01115.1 LOCN 1000-Promotor COOR W/56624-56740 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/56085-56102 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 HITS At1g01115[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01115.1 CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). protein_id AT1G01115.1p transcript_id AT1G01115.1 protein_id AT1G01115.1p transcript_id AT1G01115.1 LOCN 1000-Promotor COOR W/56624-56740 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/56007-56029 NOTE 3, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0 HITS At1g01115[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01115.1 CDS go_component endomembrane system|GO:0012505||IEA go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). protein_id AT1G01115.1p transcript_id AT1G01115.1 protein_id AT1G01115.1p transcript_id AT1G01115.1 LOCN 1000-Promotor COOR W/56624-56740 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/10915357-10915379 NOTE 3, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/10915410-10915432 NOTE 3, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/10915568-10915585 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/13905401-13905418 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/17267334-17267356 NOTE 3, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0 HITS At1g46768[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G46768.1 CDS gene_syn F2G19.32, F2G19_32, RAP2.1, related to AP2 1 gene RAP2.1 function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10. go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process response to cold|GO:0009409|20230648|IMP go_process response to water deprivation|GO:0009414|20230648|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function transcription activator activity|GO:0016563|20230648|IDA product related to AP2 1 note related to AP2 1 (RAP2.1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 10 (TAIR:AT4G36900.1); Has 5681 Blast hits to 5559 proteins in 243 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5675; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G46768.1p transcript_id AT1G46768.1 protein_id AT1G46768.1p transcript_id AT1G46768.1 LOCN 1000-Promotor COOR C/17266046-17266507 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/17267361-17267378 NOTE 2, +0 4 0 0 0, +1 4 0 0 0 HITS At1g46768[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G46768.1 CDS gene_syn F2G19.32, F2G19_32, RAP2.1, related to AP2 1 gene RAP2.1 function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10. go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process response to cold|GO:0009409|20230648|IMP go_process response to water deprivation|GO:0009414|20230648|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function transcription activator activity|GO:0016563|20230648|IDA product related to AP2 1 note related to AP2 1 (RAP2.1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 10 (TAIR:AT4G36900.1); Has 5681 Blast hits to 5559 proteins in 243 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5675; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G46768.1p transcript_id AT1G46768.1 protein_id AT1G46768.1p transcript_id AT1G46768.1 LOCN 1000-Promotor COOR C/17266046-17266507 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/17267440-17267457 NOTE 2, +0 4 0 0 0, +1 4 0 0 0 HITS At1g46768[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G46768.1 CDS gene_syn F2G19.32, F2G19_32, RAP2.1, related to AP2 1 gene RAP2.1 function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10. go_component nucleus|GO:0005634||ISS go_process regulation of transcription, DNA-dependent|GO:0006355||ISS go_process response to cold|GO:0009409|20230648|IMP go_process response to water deprivation|GO:0009414|20230648|IMP go_function DNA binding|GO:0003677||ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700|11118137|ISS go_function sequence-specific DNA binding transcription factor activity|GO:0003700||ISS go_function transcription activator activity|GO:0016563|20230648|IDA product related to AP2 1 note related to AP2 1 (RAP2.1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 10 (TAIR:AT4G36900.1); Has 5681 Blast hits to 5559 proteins in 243 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5675; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). protein_id AT1G46768.1p transcript_id AT1G46768.1 protein_id AT1G46768.1p transcript_id AT1G46768.1 LOCN 1000-Promotor COOR C/17266046-17266507 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/17267629-17267651 NOTE 3, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/17267683-17267705 NOTE 3, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/17267710-17267727 NOTE 2, +0 4 0 0 0, +1 4 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/17267736-17267764 NOTE 4, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0, +12 2 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/17267845-17267862 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr1 EVAL 100.00 COOR C/24705441-24705458 NOTE 2, +0 4 0 0 0, +1 4 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/2592499-2592515 NOTE 1, +0 4 0 0 0 HITS At2g06540[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G06540.1 mRNA LOCN Exon COOR C/2592442-2597780 HITS At2g06540[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G06540 TE pseudo gene_syn T12H3.9 note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.6e-42 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus) LOCN Exon COOR C/2592442-2597780 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/4748012-4748028 NOTE 1, +0 4 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/10507870-10507891 NOTE 2, +0 4 0 0 0, +5 3 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/10507923-10507940 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/13793961-13793978 NOTE 2, +0 4 0 0 0, +1 4 0 0 0 HITS At2g32490[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G32490.1 pseudogene LOCN 1000-Promotor COOR W/13794633-13795213 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/13794040-13794057 NOTE 2, +0 4 0 0 0, +1 4 0 0 0 HITS At2g32490[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G32490.1 pseudogene LOCN 1000-Promotor COOR W/13794633-13795213 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/13794117-13794134 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 HITS At2g32490[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G32490.1 pseudogene LOCN 1000-Promotor COOR W/13794633-13795213 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/13794144-13794161 NOTE 2, +0 4 0 0 0, +1 4 0 0 0 HITS At2g32490[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G32490.1 pseudogene LOCN 1000-Promotor COOR W/13794633-13795213 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/13794170-13794187 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 HITS At2g32490[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G32490.1 pseudogene LOCN 1000-Promotor COOR W/13794633-13795213 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/13794302-13794319 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 HITS At2g32490[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G32490.1 pseudogene LOCN 1000-Promotor COOR W/13794633-13795213 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/16626040-16626057 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/16626094-16626111 NOTE 2, +0 4 0 0 0, +1 4 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/16626224-16626241 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/16626251-16626279 NOTE 4, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0, +12 2 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/16626328-16626345 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr2 EVAL 100.00 COOR C/16626491-16626508 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 HITS At2g39840[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT2G39840.1 CDS gene_syn TOPP4, type one serine/threonine protein phosphatase 4 gene TOPP4 function Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers. go_component protein phosphatase type 1 complex|GO:0000164|7678768|ISS go_process protein amino acid dephosphorylation|GO:0006470|7678768|TAS go_function protein serine/threonine phosphatase activity|GO:0004722|7678768|ISS product type one serine/threonine protein phosphatase 4 note type one serine/threonine protein phosphatase 4 (TOPP4); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: type one serine/threonine protein phosphatase 2 (TAIR:AT5G59160.3); Has 7176 Blast hits to 6978 proteins in 618 species: Archae - 78; Bacteria - 533; Metazoa - 2415; Fungi - 1410; Plants - 987; Viruses - 16; Other Eukaryotes - 1737 (source: NCBI BLink). protein_id AT2G39840.1p transcript_id AT2G39840.1 protein_id AT2G39840.1p transcript_id AT2G39840.1 LOCN 1000-Promotor COOR W/16627430-16627646,16627963-16628522,16628601-16628789 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR C/11982423-11982440 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR C/11982502-11982546 NOTE 6, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0, +12 2 0 0 0, +27 4 0 0 0, +28 4 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR C/11982687-11982704 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR W/14001970-14001986 NOTE 1, +0 4 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR C/20188789-20188806 NOTE 2, +0 4 0 0 0, +1 4 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR C/20188815-20188837 NOTE 3, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR C/20188868-20188890 NOTE 3, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR C/20188998-20189015 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr3 EVAL 100.00 COOR C/20189025-20189042 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/14022789-14022811 NOTE 3, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0 HITS At5g35880[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G35880.1 mRNA LOCN 300-UTR3 COOR C/14022866-14023024 HITS At5g35880[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G35880 TE pseudo gene_syn MIK22.19, MIK22_19 note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32680.1) LOCN 300-UTR3 COOR C/14022866-14023024 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/14022816-14022833 NOTE 2, +0 4 0 0 0, +1 4 0 0 0 HITS At5g35880[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G35880.1 mRNA LOCN 300-UTR3 COOR C/14022866-14023024 HITS At5g35880[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G35880 TE pseudo gene_syn MIK22.19, MIK22_19 note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32680.1) LOCN 300-UTR3 COOR C/14022866-14023024 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/14022945-14022962 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 HITS At5g35880[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G35880.1 mRNA LOCN Exon COOR C/14022866-14023024 HITS At5g35880[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G35880 TE pseudo gene_syn MIK22.19, MIK22_19 note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32680.1) LOCN Exon COOR C/14022866-14023024 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/14023050-14023067 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 HITS At5g35880[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G35880.1 mRNA LOCN 300-UTR5 COOR C/14022866-14023024 HITS At5g35880[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G35880 TE pseudo gene_syn MIK22.19, MIK22_19 note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32680.1) LOCN 300-UTR5 COOR C/14022866-14023024 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/14023104-14023132 NOTE 4, +0 4 0 0 0, +1 1 0 0 0, +6 1 0 0 0, +12 2 0 0 0 HITS At5g35880[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G35880.1 mRNA LOCN 300-UTR5 COOR C/14022866-14023024 HITS At5g35880[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G35880 TE pseudo gene_syn MIK22.19, MIK22_19 note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32680.1) LOCN 300-UTR5 COOR C/14022866-14023024 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/14023213-14023230 NOTE 2, +0 4 0 0 0, +1 1 0 0 0 HITS At5g35880[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G35880.1 mRNA LOCN 300-UTR5 COOR C/14022866-14023024 HITS At5g35880[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G35880 TE pseudo gene_syn MIK22.19, MIK22_19 note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32680.1) LOCN 300-UTR5 COOR C/14022866-14023024 CLON TTTTGGCGGGAAAATGT[About MPSS sRNA] TYPE MPSS sRNA Contig CHRO chr5 EVAL 100.00 COOR C/25800914-25800931 NOTE 2, +0 4 0 0 0, +1 4 0 0 0 HITS At5g64540[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G64540.1 CDS gene_syn MUB3.6, MUB3_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; Has 2125 Blast hits to 1062 proteins in 182 species: Archae - 6; Bacteria - 116; Metazoa - 913; Fungi - 305; Plants - 50; Viruses - 20; Other Eukaryotes - 715 (source: NCBI BLink). protein_id AT5G64540.1p transcript_id AT5G64540.1 protein_id AT5G64540.1p transcript_id AT5G64540.1 LOCN 300-UTR5 COOR C/25798850-25799503,25799590-25799715,25799807-25799881,25800232-25800651 HITS At5g64540[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G64540.2 CDS gene_syn MUB3.6, MUB3_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT5G64540.2p transcript_id AT5G64540.2 protein_id AT5G64540.2p transcript_id AT5G64540.2 LOCN 300-UTR5 COOR C/25798850-25799503,25799590-25799715,25799807-25799881,25800232-25800651 HITS At5g64540[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G64540.3 CDS gene_syn MUB3.6, MUB3_6 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2125 Blast hits to 1062 proteins in 182 species: Archae - 6; Bacteria - 116; Metazoa - 913; Fungi - 305; Plants - 50; Viruses - 20; Other Eukaryotes - 715 (source: NCBI BLink). protein_id AT5G64540.3p transcript_id AT5G64540.3 protein_id AT5G64540.3p transcript_id AT5G64540.3 LOCN 300-UTR5 COOR C/25798850-25799503,25799590-25799715,25799807-25799881,25800232-25800651 HITS At5g64541[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G64541.1 CDS product unknown protein note unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT5G64541.1p transcript_id AT5G64541.1 protein_id AT5G64541.1p transcript_id AT5G64541.1 LOCN 1000-Promotor COOR W/25801314-25801451

hits since Aug 25, 2007 | T-DNA Express | Transcriptome | RiceGE japonica | RiceGE indica | Methylome | YeastGE |
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