AtTome: Genome Express Database ( Aug. 2, 2016 )


CLON CATGTTTTGTTCAC[About SAGE] 
TYPE SAGE Target
CHRO chr1
EVAL 100
COOR W/59335-59348

HITS At1g01120[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01120.1 CDS gene_syn 3-ketoacyl-CoA synthase 1, KCS1, T25K16.11, T25K16_11 gene KCS1 function Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis. go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component endoplasmic reticulum|GO:0005783|18465198|IDA go_component membrane|GO:0016020|10074711|ISS go_process very long-chain fatty acid metabolic process|GO:0000038|10074711|IDA go_process response to osmotic stress|GO:0006970|18465198|IEP go_process response to cold|GO:0009409|18465198|IEP go_process response to light stimulus|GO:0009416|18465198|IEP go_process wax biosynthetic process|GO:0010025|10074711|IDA go_process wax biosynthetic process|GO:0010025|10074711|IMP go_process fatty acid elongation|GO:0030497|10074711|IDA go_process cuticle development|GO:0042335|10074711|IMP go_function acyltransferase activity|GO:0008415||ISS go_function fatty acid elongase activity|GO:0009922|10074711|IDA product 3-ketoacyl-CoA synthase 1 note 3-ketoacyl-CoA synthase 1 (KCS1); FUNCTIONS IN: fatty acid elongase activity, acyltransferase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosolic ribosome, endoplasmic reticulum, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 11 (TAIR:AT2G26640.1); Has 3961 Blast hits to 3946 proteins in 966 species: Archae - 0; Bacteria - 1388; Metazoa - 0; Fungi - 5; Plants - 2408; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink). protein_id AT1G01120.1p transcript_id AT1G01120.1 protein_id AT1G01120.1p transcript_id AT1G01120.1 LOCN 1000-Promotor COOR C/57392-58978 CLON CATGTTTTGTTCAC[About SAGE] TYPE SAGE Target CHRO chr3 EVAL 100 COOR W/12237946-12237959 CLON CATGTTTTGTTCAC[About SAGE] TYPE SAGE Target CHRO chr5 EVAL 100 COOR W/891680-891693 HITS At5g03540[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G03540.1 CDS gene_syn ATEXO70A1, EXO70A1, F12E4.330, F12E4_330, exocyst subunit exo70 family protein A1 gene EXO70A1 function AtEXO70A1 is a member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into nine clusters on the phylogenetic tree go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component membrane|GO:0016020|17432890|IDA go_component exocyst|GO:0000145|18492870|IDA go_component exocyst|GO:0000145||ISS go_component nucleus|GO:0005634|19895414|IDA go_component cytosol|GO:0005829|19895414|IDA go_process vesicle docking involved in exocytosis|GO:0006904||ISS go_process lateral root morphogenesis|GO:0010102|16942608|IMP go_process mucilage biosynthetic process involved in seed coat development|GO:0048354|20618910|IMP go_process root development|GO:0048364|16942608|IMP product exocyst subunit exo70 family protein A1 note exocyst subunit exo70 family protein A1 (EXO70A1); INVOLVED IN: lateral root morphogenesis, mucilage biosynthetic process involved in seed coat development, root development, vesicle docking involved in exocytosis; LOCATED IN: cytosol, nucleus, plasma membrane, membrane, exocyst; EXPRESSED IN: cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein A2 (TAIR:AT5G52340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT5G03540.1p transcript_id AT5G03540.1 protein_id AT5G03540.1p transcript_id AT5G03540.1 LOCN Intron COOR W/889606-889764,889888-889983,890104-890309,890690-890920,891506-891644,891722-891934,892546-892751,892870-893070,893172-893271,893361-893461,893554-893700,893799-893916 HITS At5g03540[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G03540.3 CDS gene_syn ATEXO70A1, EXO70A1, F12E4.330, F12E4_330, exocyst subunit exo70 family protein A1 gene EXO70A1 function AtEXO70A1 is a member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into nine clusters on the phylogenetic tree go_component exocyst|GO:0000145|18492870|IDA go_component exocyst|GO:0000145||ISS go_component nucleus|GO:0005634|19895414|IDA go_component cytosol|GO:0005829|19895414|IDA go_process vesicle docking involved in exocytosis|GO:0006904||ISS go_process lateral root morphogenesis|GO:0010102|16942608|IMP go_process mucilage biosynthetic process involved in seed coat development|GO:0048354|20618910|IMP go_process root development|GO:0048364|16942608|IMP product exocyst subunit exo70 family protein A1 note exocyst subunit exo70 family protein A1 (EXO70A1); CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein A2 (TAIR:AT5G52340.1). protein_id AT5G03540.3p transcript_id AT5G03540.3 protein_id AT5G03540.3p transcript_id AT5G03540.3 LOCN Intron COOR W/889606-889764,889888-889983,890104-890309,890517-890594,890690-890920,891506-891644,891722-891934,892546-892751,892870-893070,893172-893271,893361-893461,893554-893700,893799-893916 HITS At5g03540[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G03540.2 CDS gene_syn ATEXO70A1, EXO70A1, F12E4.330, F12E4_330, exocyst subunit exo70 family protein A1 gene EXO70A1 function AtEXO70A1 is a member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into nine clusters on the phylogenetic tree go_component plasma membrane|GO:0005886|17317660|IDA go_component plasma membrane|GO:0005886|17644812|IDA go_component membrane|GO:0016020|17432890|IDA go_component exocyst|GO:0000145|18492870|IDA go_component exocyst|GO:0000145||ISS go_component nucleus|GO:0005634|19895414|IDA go_component cytosol|GO:0005829|19895414|IDA go_process vesicle docking involved in exocytosis|GO:0006904||ISS go_process lateral root morphogenesis|GO:0010102|16942608|IMP go_process mucilage biosynthetic process involved in seed coat development|GO:0048354|20618910|IMP go_process root development|GO:0048364|16942608|IMP product exocyst subunit exo70 family protein A1 note exocyst subunit exo70 family protein A1 (EXO70A1); INVOLVED IN: lateral root morphogenesis, mucilage biosynthetic process involved in seed coat development, root development, vesicle docking involved in exocytosis; LOCATED IN: cytosol, nucleus, plasma membrane, membrane, exocyst; EXPRESSED IN: cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein A2 (TAIR:AT5G52340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT5G03540.2p transcript_id AT5G03540.2 protein_id AT5G03540.2p transcript_id AT5G03540.2 LOCN Intron COOR W/890194-890309,890690-890920,891506-891644,891722-891934,892546-892751,892870-893070,893172-893271,893361-893461,893554-893700,893799-893916

hits since Aug 25, 2007 | T-DNA Express | Transcriptome | RiceGE japonica | RiceGE indica | Methylome | YeastGE |
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