AtTome: Genome Express Database ( Aug. 2, 2016 )


CLON CATGTAGTTGTAGA[About SAGE] 
TYPE SAGE Target
CHRO chr3
EVAL 100
COOR W/5516768-5516781

HITS At3g16270[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT3G16270.1 CDS gene_syn MYA6.8 go_component membrane|GO:0016020|17432890|IDA go_process intracellular protein transport|GO:0006886||IEA product ENTH/VHS family protein note ENTH/VHS family protein; INVOLVED IN: intracellular protein transport; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), Epsin, N-terminal (InterPro:IPR001026), ENTH/VHS (InterPro:IPR008942); Has 168 Blast hits to 159 proteins in 72 species: Archae - 0; Bacteria - 9; Metazoa - 51; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). protein_id AT3G16270.1p transcript_id AT3G16270.1 protein_id AT3G16270.1p transcript_id AT3G16270.1 LOCN 300-UTR3 COOR W/5513701-5513907,5514191-5514928,5515101-5515256,5515347-5516276,5516499-5516540 CLON CATGTAGTTGTAGA[About SAGE] TYPE SAGE Target CHRO chr1 EVAL 100 COOR W/51623-51636 HITS At1g01100[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01100.1 CDS gene_syn T25K16.9, T25K16_9 go_component plasma membrane|GO:0005886|17317660|IDA go_component cytosolic ribosome|GO:0022626|15734919|IDA go_process translational elongation|GO:0006414||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translational elongation|GO:0006414||ISS go_function structural constituent of ribosome|GO:0003735||ISS product 60S acidic ribosomal protein family note 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76; Bacteria - 0; Metazoa - 858; Fungi - 474; Plants - 451; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink). protein_id AT1G01100.1p transcript_id AT1G01100.1 protein_id AT1G01100.1p transcript_id AT1G01100.1 LOCN 1000-Promotor COOR C/50284-50337,50419-50631,50883-50954 HITS At1g01100[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01100.2 CDS gene_syn T25K16.9, T25K16_9 go_component plasma membrane|GO:0005886|17317660|IDA go_component cytosolic ribosome|GO:0022626|15734919|IDA go_process translational elongation|GO:0006414||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translational elongation|GO:0006414||ISS go_function structural constituent of ribosome|GO:0003735||ISS product 60S acidic ribosomal protein family note 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76; Bacteria - 0; Metazoa - 858; Fungi - 474; Plants - 451; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink). protein_id AT1G01100.2p transcript_id AT1G01100.2 protein_id AT1G01100.2p transcript_id AT1G01100.2 LOCN 1000-Promotor COOR C/50284-50337,50419-50631,50883-50954 HITS At1g01100[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01100.3 CDS gene_syn T25K16.9, T25K16_9 go_component plasma membrane|GO:0005886|17317660|IDA go_process translational elongation|GO:0006414||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translational elongation|GO:0006414||ISS go_function structural constituent of ribosome|GO:0003735||ISS product 60S acidic ribosomal protein family note 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 1446 Blast hits to 1446 proteins in 306 species: Archae - 3; Bacteria - 0; Metazoa - 542; Fungi - 379; Plants - 324; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink). protein_id AT1G01100.3p transcript_id AT1G01100.3 protein_id AT1G01100.3p transcript_id AT1G01100.3 LOCN 1000-Promotor COOR C/50284-50337,50419-50447,50496-50631,50883-50954 HITS At1g01100[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01100.4 CDS gene_syn T25K16.9, T25K16_9 go_component plasma membrane|GO:0005886|17317660|IDA go_process translational elongation|GO:0006414||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translational elongation|GO:0006414||ISS go_function structural constituent of ribosome|GO:0003735||ISS product 60S acidic ribosomal protein family note 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76; Bacteria - 0; Metazoa - 858; Fungi - 474; Plants - 451; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink). protein_id AT1G01100.4p transcript_id AT1G01100.4 protein_id AT1G01100.4p transcript_id AT1G01100.4 LOCN 1000-Promotor COOR C/50284-50337,50419-50631,50883-50954 HITS At1g01110[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01110.2 CDS gene_syn IQ-domain 18, IQD18, T25K16.10, T25K16_10 gene IQD18 go_function molecular_function|GO:0003674||ND product IQ-domain 18 note IQ-domain 18 (IQD18); FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 17 (TAIR:AT4G00820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G01110.2p transcript_id AT1G01110.2 protein_id AT1G01110.2p transcript_id AT1G01110.2 LOCN 1000-Promotor COOR W/52239-52346,52434-52730,52938-53183,53484-53624,53703-54494

hits since Aug 25, 2007 | T-DNA Express | Transcriptome | RiceGE japonica | RiceGE indica | Methylome | YeastGE |
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