AtTome: Genome Express Database ( Aug. 2, 2016 )


CLON GATCTCATCATGAACGT[About MPSS mRNA] 
TYPE MPSS mRNA Target
CHRO chr1
EVAL 100.00
COOR C/50516-50532
NOTE 268 208 207 417 251 928 915 1040 664 1341 527 127 223 191 252 0 0

HITS At1g01100[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01100.1 CDS gene_syn T25K16.9, T25K16_9 go_component plasma membrane|GO:0005886|17317660|IDA go_component cytosolic ribosome|GO:0022626|15734919|IDA go_process translational elongation|GO:0006414||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translational elongation|GO:0006414||ISS go_function structural constituent of ribosome|GO:0003735||ISS product 60S acidic ribosomal protein family note 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76; Bacteria - 0; Metazoa - 858; Fungi - 474; Plants - 451; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink). protein_id AT1G01100.1p transcript_id AT1G01100.1 protein_id AT1G01100.1p transcript_id AT1G01100.1 LOCN Exon COOR C/50284-50337,50419-50631,50883-50954 HITS At1g01100[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01100.2 CDS gene_syn T25K16.9, T25K16_9 go_component plasma membrane|GO:0005886|17317660|IDA go_component cytosolic ribosome|GO:0022626|15734919|IDA go_process translational elongation|GO:0006414||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translational elongation|GO:0006414||ISS go_function structural constituent of ribosome|GO:0003735||ISS product 60S acidic ribosomal protein family note 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76; Bacteria - 0; Metazoa - 858; Fungi - 474; Plants - 451; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink). protein_id AT1G01100.2p transcript_id AT1G01100.2 protein_id AT1G01100.2p transcript_id AT1G01100.2 LOCN Exon COOR C/50284-50337,50419-50631,50883-50954 HITS At1g01100[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01100.3 CDS gene_syn T25K16.9, T25K16_9 go_component plasma membrane|GO:0005886|17317660|IDA go_process translational elongation|GO:0006414||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translational elongation|GO:0006414||ISS go_function structural constituent of ribosome|GO:0003735||ISS product 60S acidic ribosomal protein family note 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 1446 Blast hits to 1446 proteins in 306 species: Archae - 3; Bacteria - 0; Metazoa - 542; Fungi - 379; Plants - 324; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink). protein_id AT1G01100.3p transcript_id AT1G01100.3 protein_id AT1G01100.3p transcript_id AT1G01100.3 LOCN Exon COOR C/50284-50337,50419-50447,50496-50631,50883-50954 HITS At1g01100[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01100.4 CDS gene_syn T25K16.9, T25K16_9 go_component plasma membrane|GO:0005886|17317660|IDA go_process translational elongation|GO:0006414||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translational elongation|GO:0006414||ISS go_function structural constituent of ribosome|GO:0003735||ISS product 60S acidic ribosomal protein family note 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76; Bacteria - 0; Metazoa - 858; Fungi - 474; Plants - 451; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink). protein_id AT1G01100.4p transcript_id AT1G01100.4 protein_id AT1G01100.4p transcript_id AT1G01100.4 LOCN Exon COOR C/50284-50337,50419-50631,50883-50954 CLON GATCTCATCATGAACGT[About MPSS mRNA] TYPE MPSS mRNA Target CHRO chr5 EVAL 100.00 COOR C/19328264-19328280 NOTE 268 208 207 417 251 928 915 1040 664 1341 527 127 223 191 252 0 0 HITS At5g47700[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G47700.1 CDS gene_syn MCA23.2, MCA23_2 go_component plasma membrane|GO:0005886|17317660|IDA go_process translational elongation|GO:0006414||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translational elongation|GO:0006414||ISS go_function structural constituent of ribosome|GO:0003735||ISS product 60S acidic ribosomal protein family note 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT4G00810.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). protein_id AT5G47700.1p transcript_id AT5G47700.1 protein_id AT5G47700.1p transcript_id AT5G47700.1 LOCN Exon COOR C/19328019-19328072,19328164-19328379,19328653-19328724 HITS At5g47700[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT5G47700.2 CDS gene_syn MCA23.2, MCA23_2 go_component plasma membrane|GO:0005886|17317660|IDA go_process translational elongation|GO:0006414||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translational elongation|GO:0006414||ISS go_function structural constituent of ribosome|GO:0003735||ISS product 60S acidic ribosomal protein family note 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT4G00810.2); Has 2200 Blast hits to 2200 proteins in 388 species: Archae - 82; Bacteria - 5; Metazoa - 853; Fungi - 492; Plants - 456; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink). protein_id AT5G47700.2p transcript_id AT5G47700.2 protein_id AT5G47700.2p transcript_id AT5G47700.2 LOCN Exon COOR C/19328019-19328072,19328164-19328379,19328653-19328724

hits since Aug 25, 2007 | T-DNA Express | Transcriptome | RiceGE japonica | RiceGE indica | Methylome | YeastGE |
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