AtTome: Genome Express Database ( Aug. 2, 2016 )


CODE At1g01170 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr1 TITL AT1G01170.2 CDS gene_syn F6F3.32 go_component membrane|GO:0016020|17432890|IDA go_process response to stress|GO:0006950||ISS go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1138) note Protein of unknown function (DUF1138); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1138 (InterPro:IPR009515); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1138) (TAIR:AT4G00860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01170.2p transcript_id AT1G01170.2 protein_id AT1G01170.2p transcript_id AT1G01170.2 COOR C/74105-74250,74338-74443 HITS GATCCTTTTCACTTGCC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR C/73875-73891 NOTE 0 0 1 0 0 0 6 5 5 0 0 0 0 0 0 18 4 HITS GATCCAAAGAAGCTTTG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR W/73888-73904 NOTE 84 72 65 45 75 22 42 26 22 66 10 3 3 14 3 73 130 HITS BX818169 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/73931-74252,74340-74457,74663-74705 HITS BP576014 [GenBank] TYPE ESTs EVAL e-164 LOCN Exon COOR W/73948-74252,74341-74458,74663-74698 NOTE BP584927 EL220815 ES120038 EL263591 EL129047 BP844491 EH921359 EL051475 BE038614 HITS DR244442 [GenBank] TYPE ESTs EVAL e-138 LOCN Exon COOR C/73992-74252,74340-74457,74663-74724 NOTE DR378599 BP666867 BE039533 DR244441 ES106922 ES207516 AU239051 ES191815 HITS DR244443 [GenBank] TYPE ESTs EVAL e-134 LOCN Exon COOR C/74007-74252,74340-74457,74663-74737 NOTE EL109725 EL338473 EL238019 AU230317 BP630850 BP638938 EH819492 ES139369 ES046567 AI995719 EL281685 BP858221 BP862978 BP844949 BP847595 BP866794 EH845075 BP861750 EL050425 EH990791 EH967555 EL176346 EL109638 ES096088 ES136512 EL122980 EL028471 EH795720 EL331975 EL995854 BP802521 EL324771 EL229911 EL087596 EH870860 EH864292 EH865233 EL175943 ES201007 EH891161 EH901714 EH931736 EL058805 EL105864 EL145794 EL154806 EL297516 EL327520 ES155821 HITS RAFL19-52-C06 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 98.82 LOCN Exon COOR C/74008-74250,74338-74455,74661-74717 HITS U82027 [SALK] [About & Citation] [NCBI] [Order from ABRC] TYPE Salk pUni Clone EVAL 100.00 LOCN Exon COOR C/74105-74250,74338-74443 NOTE BT024529 HITS G82027 Invitrogen/Salk Gateway clone, originally SSP/Salk pUNI clone. [pENTR223 Seq] [pENTR223 Map] [Orignal SSP/SALK U] [Order from ABRC] TYPE GateWay Clone EVAL 100.00 LOCN Exon COOR C/74105-74250,74338-74443 NOTE U82027 BT024529 pENTR_Sfi HITS 261572_at [gAtlas] TYPE Affy Probes EVAL 2e-76 LOCN Exon COOR C/74109-74252,74340-74423 HITS CATGGCCAAGAACC [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR C/74174-74187 HITS GATCTTATTATCAGAGA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/74345-74361 NOTE 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 HITS GATCAAATTCAATTATT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR5 COOR W/74553-74569 NOTE 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 CODE At1g01170 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr1 TITL AT1G01170.1 CDS gene_syn F6F3.32 go_component mitochondrion|GO:0005739|15276431|IDA go_component membrane|GO:0016020|17432890|IDA go_process response to stress|GO:0006950||ISS go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1138) note Protein of unknown function (DUF1138); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1138 (InterPro:IPR009515); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1138) (TAIR:AT4G00860.1); Has 86 Blast hits to 86 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G01170.1p transcript_id AT1G01170.1 protein_id AT1G01170.1p transcript_id AT1G01170.1 COOR C/74105-74250,74338-74443 HITS GATCCTTTTCACTTGCC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR C/73875-73891 NOTE 0 0 1 0 0 0 6 5 5 0 0 0 0 0 0 18 4 HITS GATCCAAAGAAGCTTTG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR W/73888-73904 NOTE 84 72 65 45 75 22 42 26 22 66 10 3 3 14 3 73 130 HITS BX818169 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/73931-74252,74340-74457,74663-74705 HITS BP576014 [GenBank] TYPE ESTs EVAL e-164 LOCN Exon COOR W/73948-74252,74341-74458,74663-74698 NOTE BP584927 EL220815 ES120038 EL263591 EL129047 BP844491 EH921359 EL051475 BE038614 HITS DR244442 [GenBank] TYPE ESTs EVAL e-138 LOCN Exon COOR C/73992-74252,74340-74457,74663-74724 NOTE DR378599 BP666867 BE039533 DR244441 ES106922 ES207516 AU239051 ES191815 HITS DR244443 [GenBank] TYPE ESTs EVAL e-134 LOCN Exon COOR C/74007-74252,74340-74457,74663-74737 NOTE EL109725 EL338473 EL238019 AU230317 BP630850 BP638938 EH819492 ES139369 ES046567 AI995719 EL281685 BP858221 BP862978 BP844949 BP847595 BP866794 EH845075 BP861750 EL050425 EH990791 EH967555 EL176346 EL109638 ES096088 ES136512 EL122980 EL028471 EH795720 EL331975 EL995854 BP802521 EL324771 EL229911 EL087596 EH870860 EH864292 EH865233 EL175943 ES201007 EH891161 EH901714 EH931736 EL058805 EL105864 EL145794 EL154806 EL297516 EL327520 ES155821 HITS RAFL19-52-C06 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 98.82 LOCN Exon COOR C/74008-74250,74338-74455,74661-74717 HITS U82027 [SALK] [About & Citation] [NCBI] [Order from ABRC] TYPE Salk pUni Clone EVAL 100.00 LOCN Exon COOR C/74105-74250,74338-74443 NOTE BT024529 HITS G82027 Invitrogen/Salk Gateway clone, originally SSP/Salk pUNI clone. [pENTR223 Seq] [pENTR223 Map] [Orignal SSP/SALK U] [Order from ABRC] TYPE GateWay Clone EVAL 100.00 LOCN Exon COOR C/74105-74250,74338-74443 NOTE U82027 BT024529 pENTR_Sfi HITS 261572_at [gAtlas] TYPE Affy Probes EVAL 2e-76 LOCN Exon COOR C/74109-74252,74340-74423 HITS CATGGCCAAGAACC [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR C/74174-74187 HITS GATCTTATTATCAGAGA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/74345-74361 NOTE 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 HITS GATCAAATTCAATTATT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR5 COOR W/74553-74569 NOTE 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0

hits since Aug 25, 2007 | T-DNA Express | Transcriptome | RiceGE japonica | RiceGE indica | Methylome | YeastGE |
© SIGnAL 2000-2016 | Home | About Us | Microarray | FL-cDNA | SALK T-DNA | Contact Us |