AtTome: Genome Express Database ( Aug. 2, 2016 )


CODE At1g01160 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr1 TITL AT1G01160.2 CDS gene_syn F6F3.29, GIF2, GRF1-interacting factor 2 gene GIF2 function Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA go_component nucleus|GO:0005634|15326298|ISS go_process cell proliferation|GO:0008283|19648231|IEP go_process leaf development|GO:0048366|19648231|IMP go_function transcription coactivator activity|GO:0003713|12974814|ISS go_function protein binding|GO:0005515|15326298|IPI product GRF1-interacting factor 2 note GRF1-interacting factor 2 (GIF2); FUNCTIONS IN: protein binding, transcription coactivator activity; INVOLVED IN: cell proliferation, leaf development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 3 (TAIR:AT4G00850.1); Has 35 Blast hits to 35 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G01160.2p transcript_id AT1G01160.2 protein_id AT1G01160.2p transcript_id AT1G01160.2 COOR W/72583-72669,72915-73016,73087-73163,73287-73395,73488-73740,73822-73883 HITS ES182075 [GenBank] TYPE ESTs EVAL 9e-30 LOCN 300-UTR5 COOR W/72339-72412 NOTE EL992476 ES042427 HITS ES211121 [GenBank] TYPE ESTs EVAL 8e-27 LOCN 300-UTR5 COOR W/72345-72413 HITS DR283666 [GenBank] TYPE ESTs EVAL e-178 LOCN Exon COOR W/72350-72669,73087-73166,73290-73357 NOTE DR283669 ES039190 BE530018 DR283665 DR283667 HITS BX841803 [GenBank] [Order] TYPE GSLT cDNA EVAL e-172 LOCN Exon COOR W/72357-72669,73087-73163,73287-73393,73486-73741,73822-74096 HITS DR283664 [GenBank] TYPE ESTs EVAL e-166 LOCN Exon COOR W/72371-72669,73087-73163,73287-73393,73486-73676 NOTE AV821553 BP823811 BP834088 F14390 AV550033 AV553796 EL332238 EL137885 ES200607 AV824087 DR283668 DR283670 DR283671 BX835419 BP812429 BP836651 EH847530 HITS RAFL04-13-H03 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL 0.0 LOCN Exon COOR C/72376-72844 HITS AY102640 [GenBank] TYPE Community cDNA EVAL 98.56 LOCN Exon COOR W/72379-72669,73087-73163,73287-73395,73488-73740,73822-74050 HITS RAFL06-13-G16 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-136 LOCN Exon COOR C/72418-72669,73087-73163,73287-73393,73486-73718 HITS R13413 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 99.89 LOCN Exon COOR W/72419-72669,73087-73163,73287-73395,73488-73740,73822-74046 NOTE AF410307 HITS BX835419 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR W/72431-73401 HITS GATCCAAACGCAGGAAA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR5 COOR C/72484-72500 NOTE 1 0 0 0 0 0 6 0 0 0 26 0 0 0 0 0 0 HITS GATCGGTCTGGGTTTTG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR5 COOR W/72497-72513 NOTE 0 0 0 0 0 0 2 0 0 0 0 0 0 6 0 0 0 HITS U13413 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP pUni Clone EVAL 100.00 LOCN Exon COOR W/72583-72669,73087-73163,73287-73395,73488-73740,73822-73883 NOTE AY102133 HITS G13413 Invitrogen/Salk Gateway clone, originally SSP/Salk pUNI clone. [pENTR223 Seq] [pENTR223 Map] [Orignal SSP/SALK U] [Order from ABRC] TYPE GateWay Clone EVAL 100.00 LOCN Exon COOR W/72583-72669,73087-73163,73287-73395,73488-73740,73822-73883 NOTE U13413 AY102133 pENTR_Sfi HITS 261582_at [gAtlas] TYPE Affy Probes EVAL 2e-71 LOCN Exon COOR W/72606-72667,73085-73163,73287-73393,73486-73621 HITS H36066 [GenBank] TYPE ESTs EVAL 2e-91 LOCN Exon COOR W/73133-73163,73287-73393,73486-73696 HITS AV545121 [GenBank] TYPE ESTs EVAL e-142 LOCN Exon COOR C/73287-73393,73486-73740,73822-74064 NOTE EL991999 EL018630 EH889551 HITS DR355194 [GenBank] TYPE ESTs EVAL e-134 LOCN Exon COOR C/73481-73739,73821-74074 HITS BX839078 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/73485-74252,74340-74592 NOTE AV540105 DR355195 AV785233 EL152428 BP598859 AV782048 AV800424 F14391 BP666965 ES167179 BP627610 BP604933 AV537923 EH847280 ES196854 EH954430 ES005198 EL973885 AV537970 CF773210 ES153069 ES170211 ES045681 EL072897 HITS BX839078 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/73533-74252,74340-74592 HITS GATCCTGAAACTGGAGT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/73598-73614 NOTE 0 0 0 0 0 5 0 0 0 0 2 0 0 0 3 34 0 HITS GATCCGCAACAGCAGCA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/73611-73627 NOTE 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 33 0 HITS CATGCGATGCAACA [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/73701-73714 HITS GATCCTTTTCACTTGCC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/73875-73891 NOTE 0 0 1 0 0 0 6 5 5 0 0 0 0 0 0 18 4 HITS GATCCAAAGAAGCTTTG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR W/73888-73904 NOTE 84 72 65 45 75 22 42 26 22 66 10 3 3 14 3 73 130 HITS BX818169 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN 300-UTR3 COOR C/73931-74252,74340-74457,74663-74705 HITS BP576014 [GenBank] TYPE ESTs EVAL e-164 LOCN 300-UTR3 COOR W/73948-74252,74341-74458,74663-74698 NOTE BP584927 EL220815 ES120038 EL263591 EL129047 BP844491 EH921359 EL051475 BE038614 HITS DR244442 [GenBank] TYPE ESTs EVAL e-138 LOCN 300-UTR3 COOR C/73992-74252,74340-74457,74663-74724 NOTE DR378599 BP666867 BE039533 DR244441 ES106922 ES207516 AU239051 ES191815 HITS DR244443 [GenBank] TYPE ESTs EVAL e-134 LOCN 300-UTR3 COOR C/74007-74252,74340-74457,74663-74737 NOTE EL109725 EL338473 EL238019 AU230317 BP630850 BP638938 EH819492 ES139369 ES046567 AI995719 EL281685 BP858221 BP862978 BP844949 BP847595 BP866794 EH845075 BP861750 EL050425 EH990791 EH967555 EL176346 EL109638 ES096088 ES136512 EL122980 EL028471 EH795720 EL331975 EL995854 BP802521 EL324771 EL229911 EL087596 EH870860 EH864292 EH865233 EL175943 ES201007 EH891161 EH901714 EH931736 EL058805 EL105864 EL145794 EL154806 EL297516 EL327520 ES155821 HITS RAFL19-52-C06 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 98.82 LOCN 300-UTR3 COOR C/74008-74250,74338-74455,74661-74717 HITS U82027 [SALK] [About & Citation] [NCBI] [Order from ABRC] TYPE Salk pUni Clone EVAL 100.00 LOCN 300-UTR3 COOR C/74105-74250,74338-74443 NOTE BT024529 HITS G82027 Invitrogen/Salk Gateway clone, originally SSP/Salk pUNI clone. [pENTR223 Seq] [pENTR223 Map] [Orignal SSP/SALK U] [Order from ABRC] TYPE GateWay Clone EVAL 100.00 LOCN 300-UTR3 COOR C/74105-74250,74338-74443 NOTE U82027 BT024529 pENTR_Sfi HITS 261572_at [gAtlas] TYPE Affy Probes EVAL 2e-76 LOCN 300-UTR3 COOR C/74109-74252,74340-74423 HITS CATGGCCAAGAACC [About SAGE] TYPE SAGE Target EVAL 100 LOCN 300-UTR3 COOR C/74174-74187 CODE At1g01160 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr1 TITL AT1G01160.1 CDS gene_syn F6F3.29, GIF2, GRF1-interacting factor 2 gene GIF2 function Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA go_component nucleus|GO:0005634|15326298|ISS go_process cell proliferation|GO:0008283|19648231|IEP go_process leaf development|GO:0048366|19648231|IMP go_function transcription coactivator activity|GO:0003713|12974814|ISS go_function protein binding|GO:0005515|15326298|IPI product GRF1-interacting factor 2 note GRF1-interacting factor 2 (GIF2); CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 3 (TAIR:AT4G00850.1); Has 425 Blast hits to 425 proteins in 91 species: Archae - 0; Bacteria - 4; Metazoa - 291; Fungi - 20; Plants - 89; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). protein_id AT1G01160.1p transcript_id AT1G01160.1 protein_id AT1G01160.1p transcript_id AT1G01160.1 COOR W/72583-72669,73087-73163,73287-73395,73488-73740,73822-73883 HITS ES182075 [GenBank] TYPE ESTs EVAL 9e-30 LOCN 300-UTR5 COOR W/72339-72412 NOTE EL992476 ES042427 HITS ES211121 [GenBank] TYPE ESTs EVAL 8e-27 LOCN 300-UTR5 COOR W/72345-72413 HITS DR283666 [GenBank] TYPE ESTs EVAL e-178 LOCN Exon COOR W/72350-72669,73087-73166,73290-73357 NOTE DR283669 ES039190 BE530018 DR283665 DR283667 HITS BX841803 [GenBank] [Order] TYPE GSLT cDNA EVAL e-172 LOCN Exon COOR W/72357-72669,73087-73163,73287-73393,73486-73741,73822-74096 HITS DR283664 [GenBank] TYPE ESTs EVAL e-166 LOCN Exon COOR W/72371-72669,73087-73163,73287-73393,73486-73676 NOTE AV821553 BP823811 BP834088 F14390 AV550033 AV553796 EL332238 EL137885 ES200607 AV824087 DR283668 DR283670 DR283671 BX835419 BP812429 BP836651 EH847530 HITS RAFL04-13-H03 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL 0.0 LOCN Exon COOR C/72376-72844 HITS AY102640 [GenBank] TYPE Community cDNA EVAL 98.56 LOCN Exon COOR W/72379-72669,73087-73163,73287-73395,73488-73740,73822-74050 HITS RAFL06-13-G16 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-136 LOCN Exon COOR C/72418-72669,73087-73163,73287-73393,73486-73718 HITS R13413 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 99.89 LOCN Exon COOR W/72419-72669,73087-73163,73287-73395,73488-73740,73822-74046 NOTE AF410307 HITS BX835419 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR W/72431-73401 HITS GATCCAAACGCAGGAAA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR5 COOR C/72484-72500 NOTE 1 0 0 0 0 0 6 0 0 0 26 0 0 0 0 0 0 HITS GATCGGTCTGGGTTTTG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR5 COOR W/72497-72513 NOTE 0 0 0 0 0 0 2 0 0 0 0 0 0 6 0 0 0 HITS U13413 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP pUni Clone EVAL 100.00 LOCN Exon COOR W/72583-72669,73087-73163,73287-73395,73488-73740,73822-73883 NOTE AY102133 HITS G13413 Invitrogen/Salk Gateway clone, originally SSP/Salk pUNI clone. [pENTR223 Seq] [pENTR223 Map] [Orignal SSP/SALK U] [Order from ABRC] TYPE GateWay Clone EVAL 100.00 LOCN Exon COOR W/72583-72669,73087-73163,73287-73395,73488-73740,73822-73883 NOTE U13413 AY102133 pENTR_Sfi HITS 261582_at [gAtlas] TYPE Affy Probes EVAL 2e-71 LOCN Exon COOR W/72606-72667,73085-73163,73287-73393,73486-73621 HITS H36066 [GenBank] TYPE ESTs EVAL 2e-91 LOCN Exon COOR W/73133-73163,73287-73393,73486-73696 HITS AV545121 [GenBank] TYPE ESTs EVAL e-142 LOCN Exon COOR C/73287-73393,73486-73740,73822-74064 NOTE EL991999 EL018630 EH889551 HITS DR355194 [GenBank] TYPE ESTs EVAL e-134 LOCN Exon COOR C/73481-73739,73821-74074 HITS BX839078 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/73485-74252,74340-74592 NOTE AV540105 DR355195 AV785233 EL152428 BP598859 AV782048 AV800424 F14391 BP666965 ES167179 BP627610 BP604933 AV537923 EH847280 ES196854 EH954430 ES005198 EL973885 AV537970 CF773210 ES153069 ES170211 ES045681 EL072897 HITS BX839078 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/73533-74252,74340-74592 HITS GATCCTGAAACTGGAGT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/73598-73614 NOTE 0 0 0 0 0 5 0 0 0 0 2 0 0 0 3 34 0 HITS GATCCGCAACAGCAGCA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/73611-73627 NOTE 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 33 0 HITS CATGCGATGCAACA [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/73701-73714 HITS GATCCTTTTCACTTGCC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/73875-73891 NOTE 0 0 1 0 0 0 6 5 5 0 0 0 0 0 0 18 4 HITS GATCCAAAGAAGCTTTG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR W/73888-73904 NOTE 84 72 65 45 75 22 42 26 22 66 10 3 3 14 3 73 130 HITS BX818169 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN 300-UTR3 COOR C/73931-74252,74340-74457,74663-74705 HITS BP576014 [GenBank] TYPE ESTs EVAL e-164 LOCN 300-UTR3 COOR W/73948-74252,74341-74458,74663-74698 NOTE BP584927 EL220815 ES120038 EL263591 EL129047 BP844491 EH921359 EL051475 BE038614 HITS DR244442 [GenBank] TYPE ESTs EVAL e-138 LOCN 300-UTR3 COOR C/73992-74252,74340-74457,74663-74724 NOTE DR378599 BP666867 BE039533 DR244441 ES106922 ES207516 AU239051 ES191815 HITS DR244443 [GenBank] TYPE ESTs EVAL e-134 LOCN 300-UTR3 COOR C/74007-74252,74340-74457,74663-74737 NOTE EL109725 EL338473 EL238019 AU230317 BP630850 BP638938 EH819492 ES139369 ES046567 AI995719 EL281685 BP858221 BP862978 BP844949 BP847595 BP866794 EH845075 BP861750 EL050425 EH990791 EH967555 EL176346 EL109638 ES096088 ES136512 EL122980 EL028471 EH795720 EL331975 EL995854 BP802521 EL324771 EL229911 EL087596 EH870860 EH864292 EH865233 EL175943 ES201007 EH891161 EH901714 EH931736 EL058805 EL105864 EL145794 EL154806 EL297516 EL327520 ES155821 HITS RAFL19-52-C06 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 98.82 LOCN 300-UTR3 COOR C/74008-74250,74338-74455,74661-74717 HITS U82027 [SALK] [About & Citation] [NCBI] [Order from ABRC] TYPE Salk pUni Clone EVAL 100.00 LOCN 300-UTR3 COOR C/74105-74250,74338-74443 NOTE BT024529 HITS G82027 Invitrogen/Salk Gateway clone, originally SSP/Salk pUNI clone. [pENTR223 Seq] [pENTR223 Map] [Orignal SSP/SALK U] [Order from ABRC] TYPE GateWay Clone EVAL 100.00 LOCN 300-UTR3 COOR C/74105-74250,74338-74443 NOTE U82027 BT024529 pENTR_Sfi HITS 261572_at [gAtlas] TYPE Affy Probes EVAL 2e-76 LOCN 300-UTR3 COOR C/74109-74252,74340-74423 HITS CATGGCCAAGAACC [About SAGE] TYPE SAGE Target EVAL 100 LOCN 300-UTR3 COOR C/74174-74187

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