AtTome: Genome Express Database ( Aug. 2, 2016 )


CODE At1g01130 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr1 TITL AT1G01130.1 CDS gene_syn F6F3.33 go_component cellular_component|GO:0005575||ND go_process biological_process|GO:0008150||ND go_function molecular_function|GO:0003674||ND product unknown protein note CONTAINS InterPro DOMAIN/s: CBL-interacting protein kinase (InterPro:IPR020660), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47170.1); Has 176 Blast hits to 176 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G01130.1p transcript_id AT1G01130.1 protein_id AT1G01130.1p transcript_id AT1G01130.1 COOR C/61905-61949,62050-62124,63557-63811 HITS 261575_at [gAtlas] TYPE Affy Probes EVAL 0.0 LOCN Exon COOR C/61972-62122,63429-63774 HITS CATGTATGTGTTGT [About SAGE] TYPE SAGE Target EVAL 100 LOCN Intron COOR W/62656-62669 HITS CATGTGTTTACTGA [About SAGE] TYPE SAGE Target EVAL 100 LOCN Intron COOR W/62804-62817 HITS EG503387 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/62993-63622 NOTE EG503398 EG484783 EG484784 DR373829 ES117174 HITS DR310109 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/63274-63814 NOTE DR310108 EG503664 EG503675 EG484780 EG484781 EG484795 EG484797 EG484798 EG484799 EG502798 EG502832 EG522745 EG523013 EG484786 EG484787 EG503287 EG503298 EG484778 EG484779 EG484788 EG484789 EG484790 EG484791 EG484792 EG484793 EG484800 EG484801 EG484782 ES031980 HITS DQ446217 [About TIGR ORFs] [GenBank] TYPE TIGR ORFs EVAL 99.55 LOCN Exon COOR C/63373-63811 HITS DQ652818 [About TIGR ORFs] [GenBank] TYPE TIGR ORFs EVAL 99.32 LOCN Exon COOR C/63374-63811 HITS GATCCGTCGTATGAATG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/63576-63592 NOTE 0 4 4 4 7 36 22 15 19 2 72 1 0 21 2 0 33 HITS EG525253 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/63601-64042 NOTE EG525242 EG525243 EG525244 EG525246 EG525247 EG525248 EG525249 EG525250 EG525251 EG525252 HITS EG525258 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/63602-64073 NOTE EG525255 EG525257 EG525254 EG525259 EG525260 EG525261 EG525262 EG525263 EG525264 EG525266 EG525268 EH890172 EG525265 ES176688 ES125848 DR368582 HITS GATCTATGTAGCTAAGA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR5 COOR W/64011-64027 NOTE 0 2 0 9 6 0 0 0 0 1 0 0 0 0 0 0 0 HITS BP632666 [GenBank] TYPE ESTs EVAL e-133 LOCN 1000-Promotor COOR W/64166-64421 HITS BP599166 [GenBank] TYPE ESTs EVAL e-173 LOCN 1000-Promotor COOR W/64167-64477,64584-64658,64763-64809 NOTE AV817447 AV807662 BP600864 BP604283 BP607140 BP616311 BP617305 BP623099 BP627397 BP629580 BP630029 BP635563 BP668812 BP784053 BP791805 AV805656 BP777159 AV799654 AV809366 AV440328 HITS RAFL09-20-N24 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-149 LOCN 1000-Promotor COOR C/64171-64477,64584-64656 HITS AV782299 [GenBank] TYPE ESTs EVAL e-166 LOCN 1000-Promotor COOR W/64182-64477,64584-64658,64753-64807,64901-65018,65111-65219,65333-65385 NOTE BP791602 AV795034 BP613791 EH847924 CD529629 CD529819 AV816834 BP606257 HITS RAFL04-16-A16 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-166 LOCN 1000-Promotor COOR C/64182-64477,64584-64658,64753-64807,64901-65018,65111-65219,65333-65385 HITS R15436 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 99.82 LOCN 1000-Promotor COOR C/64182-64383,64382-64475,64582-64656,64751-64807,64901-65017,65110-65217,65331-65456,65563-65652,65739-65864,66107-66160,66262-66342,66450-66557,66678-66749,66835-66897,67324-67619 NOTE AF386999 HITS BX817129 [GenBank] [Order] TYPE GSLT cDNA EVAL e-158 LOCN 1000-Promotor COOR C/64201-64477,64583-64658,64753-64807,64901-65018,65111-65216,65329-65456,65563-65652,65739-65866,66109-66159,66261-66342,66450-66557,66678-66751,66837-66897,67324-67606 HITS GATCATCCTCAAACTCG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 1000-Promotor COOR C/64209-64225 NOTE 0 66 105 9 168 10 52 32 12 0 8 18 20 83 0 0 63 HITS U15436 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP Gateway Clone EVAL 99.93 LOCN 1000-Promotor COOR C/64290-64475,64582-64656,64751-64807,64901-65017,65110-65217,65331-65456,65563-65652,65739-65864,66107-66160,66262-66342,66450-66557,66678-66749,66835-66897,67324-67512 NOTE U15436 AY093242 pENTR-TOPO HITS AI997157 [GenBank] TYPE ESTs EVAL 2e-66 LOCN 1000-Promotor COOR W/64337-64478,64584-64658,64753-64807,64901-65018,65111-65219,65333-65430 NOTE EL002880 EH825693 DR340107 EH958447 DR340108 EL182048 EL146905 EL062528 EL204773 HITS AF295664 [GenBank] TYPE Community cDNA EVAL 100.00 LOCN 1000-Promotor COOR C/64398-64475,64582-64653,64748-64807,64901-65017,65110-65217,65331-65456,65563-65652,65733-65858,66100-66160,66262-66342,66450-66557,66678-66746,66832-66897,67324-67512 HITS AF339147 [GenBank] TYPE Community cDNA EVAL 100.00 LOCN 1000-Promotor COOR C/64398-64475,64570-64656,64751-64807,64901-65017,65110-65217,65331-65456,65563-65652,65739-65864,66107-66160,66262-66342,66450-66557,66678-66749,66835-66897,67324-67512 HITS 261581_at [gAtlas] TYPE Affy Probes EVAL 8e-66 LOCN 1000-Promotor COOR C/64415-64475,64582-64658,64753-64807,64901-65018,65111-65216,65330-65456,65563-65598 HITS GATCCGGTTAACATCTC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 1000-Promotor COOR C/64521-64537 NOTE 0 0 0 0 0 0 0 0 0 0 1 0 0 10 0 0 0

hits since Aug 25, 2007 | T-DNA Express | Transcriptome | RiceGE japonica | RiceGE indica | Methylome | YeastGE |
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