AtTome: Genome Express Database ( Aug. 2, 2016 )


CODE At1g01120 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr1 TITL AT1G01120.1 CDS gene_syn 3-ketoacyl-CoA synthase 1, KCS1, T25K16.11, T25K16_11 gene KCS1 function Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis. go_component cytosolic ribosome|GO:0022626|15821981|IDA go_component endoplasmic reticulum|GO:0005783|18465198|IDA go_component membrane|GO:0016020|10074711|ISS go_process very long-chain fatty acid metabolic process|GO:0000038|10074711|IDA go_process response to osmotic stress|GO:0006970|18465198|IEP go_process response to cold|GO:0009409|18465198|IEP go_process response to light stimulus|GO:0009416|18465198|IEP go_process wax biosynthetic process|GO:0010025|10074711|IDA go_process wax biosynthetic process|GO:0010025|10074711|IMP go_process fatty acid elongation|GO:0030497|10074711|IDA go_process cuticle development|GO:0042335|10074711|IMP go_function acyltransferase activity|GO:0008415||ISS go_function fatty acid elongase activity|GO:0009922|10074711|IDA product 3-ketoacyl-CoA synthase 1 note 3-ketoacyl-CoA synthase 1 (KCS1); FUNCTIONS IN: fatty acid elongase activity, acyltransferase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosolic ribosome, endoplasmic reticulum, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 11 (TAIR:AT2G26640.1); Has 3961 Blast hits to 3946 proteins in 966 species: Archae - 0; Bacteria - 1388; Metazoa - 0; Fungi - 5; Plants - 2408; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink). protein_id AT1G01120.1p transcript_id AT1G01120.1 protein_id AT1G01120.1p transcript_id AT1G01120.1 COOR C/57392-58978 HITS BX817516 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/57254-58096 HITS AV806994 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/57269-57674 NOTE EL303624 HITS BP606596 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/57271-57708 NOTE AV815250 BP777411 BP782647 BP784987 BP787435 AV793797 HITS RAFL08-10-E13 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL e-106 LOCN Exon COOR C/57272-57469 HITS RAFL08-10-E13 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 99.30 LOCN Exon COOR C/57272-59124 HITS AI999379 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/57277-57758 HITS RAFL22-99-L17 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 97.67 LOCN Exon COOR C/57279-57783 HITS Z26005 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/57283-57894 NOTE BP599087 BP602626 BP782151 AV800578 AV809340 BP596852 BP601605 BP602678 BP608777 BP612682 BP617133 AV518820 AV567670 BP792870 ES034156 BP614297 AA394957 BP572081 BP598814 AV538426 BE522553 EL236670 BP601790 BP604225 EL076983 EL086792 AV533301 EL028053 EH943560 BP834386 ES040041 EH915374 HITS RAFL22-31-L19 [NCBI] [Order from RIKEN BRC] TYPE RIKEN FL cDNA EVAL 97.85 LOCN Exon COOR C/57287-58563 HITS R19207 [SSP] [About & Citation] [NCBI] [Order] - click RAFL TYPE SSP cDNA EVAL 99.21 LOCN Exon COOR C/57287-59167 NOTE AY074285 HITS RAFL09-59-C06 [NCBI] [Order from RIKEN BRC] TYPE RIKEN EST EVAL 0.0 LOCN Exon COOR C/57288-57722 HITS BX815372 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/57303-59117 HITS U19207 [SSP] [About & Citation] [NCBI] [Order from ABRC] TYPE SSP pUni Clone EVAL 100.00 LOCN Exon COOR C/57361-58978 NOTE AY096568 HITS G19207 Invitrogen/Salk Gateway clone, originally SSP/Salk pUNI clone. [pENTR223 Seq] [pENTR223 Map] [Orignal SSP/SALK U] [Order from ABRC] TYPE GateWay Clone EVAL 100.00 LOCN Exon COOR C/57361-58978 NOTE U19207 AY096568 pENTR_Sfi HITS AF053345 [GenBank] TYPE Community DNA EVAL 100.00 LOCN Exon COOR C/57392-58954 HITS GATCAATATCCGGTTAA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/57405-57421 NOTE 53 61 88 12 216 28 52 24 60 21 72 0 30 50 0 37 134 HITS 261570_at [gAtlas] TYPE Affy Probes EVAL 0.0 LOCN Exon COOR C/57417-57991 HITS GATCGGGTTTCAAGTGT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/57497-57513 NOTE 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 6 HITS EG528554 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/57505-58339 NOTE EG528557 BP666921 EL223512 T44368 EH929683 EL041820 EL211028 EL115111 EL045278 EL086421 ES127589 HITS GATCCAAACGCAATCTG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/57510-57526 NOTE 0 0 0 0 0 3 0 0 0 0 0 0 0 0 4 0 0 HITS GATCAGACGACAAGAAC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/57947-57963 NOTE 0 0 0 0 0 9 0 0 0 2 0 0 0 0 0 0 0 HITS DR262933 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/57953-58667 NOTE EL012555 EL261999 EL304824 N96054 EL222104 EL053375 BE522554 HITS BX840254 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/58104-59106 NOTE DR262932 BP832693 BP840959 AV550701 EH819571 BP830277 EL284818 ES139508 HITS BX840254 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/58104-59106 HITS GATCTCGCTAACAATCT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/58167-58183 NOTE 0 0 0 0 0 2 0 0 0 0 0 7 0 0 0 0 0 HITS GATCGTGAACCATTACA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/58252-58268 NOTE 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 HITS EG528558 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/58299-59129 NOTE EL107911 ES040469 EL059556 BP796729 AV525396 HITS GATCATTCACCGATGAC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/58511-58527 NOTE 0 0 0 0 0 0 1 0 0 0 0 0 0 0 9 0 0 HITS GATCCATTTTCCTCAGT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/58524-58540 NOTE 0 0 0 0 2 0 0 0 0 0 2 0 0 0 10 25 0 HITS AV829943 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR C/58606-59167 NOTE EG528556 DR356485 DR356484 T42377 EL066416 EL093119 BP836351 BP824813 EL195963 BP811968 EL216331 ES051227 EH819558 EL213812 HITS CATGTTTTGTTCAC [About SAGE] TYPE SAGE Target EVAL 100 LOCN 1000-Promotor COOR W/59335-59348

hits since Aug 25, 2007 | T-DNA Express | Transcriptome | RiceGE japonica | RiceGE indica | Methylome | YeastGE |
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