AtTome: Genome Express Database ( Aug. 2, 2016 )


CODE At1g01110 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr1 TITL AT1G01110.1 CDS gene_syn IQ-domain 18, IQD18, T25K16.10, T25K16_10 gene IQD18 go_component mitochondrion|GO:0005739||IEA go_function molecular_function|GO:0003674||ND product IQ-domain 18 note IQ-domain 18 (IQD18); FUNCTIONS IN: molecular_function unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: IQ-domain 17 (TAIR:AT4G00820.1); Has 1112 Blast hits to 678 proteins in 50 species: Archae - 0; Bacteria - 10; Metazoa - 109; Fungi - 16; Plants - 528; Viruses - 4; Other Eukaryotes - 445 (source: NCBI BLink). protein_id AT1G01110.1p transcript_id AT1G01110.1 protein_id AT1G01110.1p transcript_id AT1G01110.1 COOR W/53022-53183,53484-53624,53703-54494 HITS ES041015 [GenBank] TYPE ESTs EVAL 5e-19 LOCN 1000-Promotor COOR W/52084-52135 HITS ASRP190244 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN 1000-Promotor COOR C/52624-52644 HITS DR293821 [GenBank] TYPE ESTs EVAL e-175 LOCN Exon COOR W/52869-53183,53484-53625 NOTE ES057331 ES055317 ES045982 ES008246 HITS AY085363 [GenBank] TYPE Community cDNA EVAL 97.01 LOCN Exon COOR W/52869-53183,53484-53624,53703-54685 HITS DR293822 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/53483-53620,53699-54239 NOTE DR293820 HITS CA781362 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/53735-54359 HITS 261580_at [gAtlas] TYPE Affy Probes EVAL 0.0 LOCN Exon COOR W/53904-54462 HITS DR380858 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/54101-54692 NOTE EH958716 ES204447 HITS GATCCGGTCTCATAGTG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/54221-54237 NOTE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 HITS ASRP149119 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Exon COOR W/54459-54480 HITS GATCTTGACAGTTGATT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR C/54510-54526 NOTE 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 HITS GATCTTTCATCATCCTC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR W/54523-54539 NOTE 0 15 0 3 0 0 2 0 3 9 0 0 0 4 0 0 0 HITS GATCTGTAACTTCATAA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR W/54646-54662 NOTE 1 44 2 26 5 3 18 9 15 0 2 0 0 2 0 0 0 CODE At1g01110 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr1 TITL AT1G01110.2 CDS gene_syn IQ-domain 18, IQD18, T25K16.10, T25K16_10 gene IQD18 go_function molecular_function|GO:0003674||ND product IQ-domain 18 note IQ-domain 18 (IQD18); FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 17 (TAIR:AT4G00820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_id AT1G01110.2p transcript_id AT1G01110.2 protein_id AT1G01110.2p transcript_id AT1G01110.2 COOR W/52239-52346,52434-52730,52938-53183,53484-53624,53703-54494 HITS CATGTAGTTGTAGA [About SAGE] TYPE SAGE Target EVAL 100 LOCN 1000-Promotor COOR W/51623-51636 HITS ES041015 [GenBank] TYPE ESTs EVAL 5e-19 LOCN 300-UTR5 COOR W/52084-52135 HITS ASRP190244 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Exon COOR C/52624-52644 HITS DR293821 [GenBank] TYPE ESTs EVAL e-175 LOCN Exon COOR W/52869-53183,53484-53625 NOTE ES057331 ES055317 ES045982 ES008246 HITS AY085363 [GenBank] TYPE Community cDNA EVAL 97.01 LOCN Exon COOR W/52869-53183,53484-53624,53703-54685 HITS DR293822 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/53483-53620,53699-54239 NOTE DR293820 HITS CA781362 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/53735-54359 HITS 261580_at [gAtlas] TYPE Affy Probes EVAL 0.0 LOCN Exon COOR W/53904-54462 HITS DR380858 [GenBank] TYPE ESTs EVAL 0.0 LOCN Exon COOR W/54101-54692 NOTE EH958716 ES204447 HITS GATCCGGTCTCATAGTG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/54221-54237 NOTE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 HITS ASRP149119 [About ASRP sRNA] TYPE ASRP sRNA contig EVAL 100.00 LOCN Exon COOR W/54459-54480 HITS GATCTTGACAGTTGATT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR C/54510-54526 NOTE 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 HITS GATCTTTCATCATCCTC [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR W/54523-54539 NOTE 0 15 0 3 0 0 2 0 3 9 0 0 0 4 0 0 0 HITS GATCTGTAACTTCATAA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR3 COOR W/54646-54662 NOTE 1 44 2 26 5 3 18 9 15 0 2 0 0 2 0 0 0

hits since Aug 25, 2007 | T-DNA Express | Transcriptome | RiceGE japonica | RiceGE indica | Methylome | YeastGE |
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