AtTome: Genome Express Database ( Aug. 2, 2016 )


CODE At1g01070 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr1 TITL AT1G01070.1 CDS gene_syn T25K16.7, T25K16_7 go_component membrane|GO:0016020||IEA product nodulin MtN21 /EamA-like transporter family protein note nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G11460.1); Has 3211 Blast hits to 3199 proteins in 599 species: Archae - 23; Bacteria - 1686; Metazoa - 4; Fungi - 6; Plants - 1233; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink). protein_id AT1G01070.1p transcript_id AT1G01070.1 protein_id AT1G01070.1p transcript_id AT1G01070.1 COOR C/38898-39054,39136-39287,39409-39814,40213-40329,40473-40535,40675-40877 HITS DR373232 [GenBank] TYPE ESTs EVAL e-172 LOCN Exon COOR C/38752-39056,39138-39284,39408-39602 HITS AY089039 [GenBank] TYPE Community cDNA EVAL 99.92 LOCN Exon COOR C/38753-39054,39136-39287,39409-39814,40213-40329,40473-40535,40675-40944 HITS BX816186 [GenBank] [Order] TYPE GSLT cDNA EVAL e-117 LOCN Exon COOR C/38790-39057,39139-39285,39408-39816,40215-40330,40474-40537 HITS S68296 [SALK] [About & Citation] [NCBI] [Order from ABRC] TYPE Salk cDNA EVAL 100.00 LOCN Exon COOR C/38815-39054,39136-39287,39409-39814,40213-40329,40473-40535,40675-40912 NOTE BT015826 HITS U68296 [SALK] [About & Citation] [NCBI] [Order from ABRC] TYPE Salk pUni Clone EVAL 100.00 LOCN Exon COOR C/38898-39054,39136-39287,39409-39814,40213-40329,40473-40535,40675-40877 NOTE BT020209 HITS G68296 Invitrogen/Salk Gateway clone, originally SSP/Salk pUNI clone. [pENTR223 Seq] [pENTR223 Map] [Orignal SSP/SALK U] [Order from ABRC] TYPE GateWay Clone EVAL 100.00 LOCN Exon COOR C/38898-39054,39136-39287,39409-39814,40213-40329,40473-40535,40675-40877 NOTE U68296 BT020209 pENTR_Sfi HITS 261576_at [gAtlas] TYPE Affy Probes EVAL 8e-84 LOCN Exon COOR C/38900-39056,39138-39287,39409-39550 HITS GATCACTAGTGACCATA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/39030-39046 NOTE 6 30 129 20 5 0 0 0 5 17 0 0 0 9 0 3 0 HITS CATGTTGTTGCAAC [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/39247-39260 HITS GATCCAATCATTAACGT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/39448-39464 NOTE 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 HITS DR333276 [GenBank] TYPE ESTs EVAL e-153 LOCN Exon COOR C/39516-39821,40220-40330,40474-40537 HITS BX816126 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/40212-40328,40472-40927 HITS DR333275 [GenBank] TYPE ESTs EVAL e-146 LOCN Exon COOR C/40222-40330,40474-40534,40674-40944 NOTE EH960684 EH931186 HITS GATCATTTCGTCAGTGG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/40482-40498 NOTE 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 HITS GATCGAAATAGGAGATA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Intron COOR C/40646-40662 NOTE 1 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 CODE At1g01070 [Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene CHRO chr1 TITL AT1G01070.2 CDS gene_syn T25K16.7, T25K16_7 go_component membrane|GO:0016020||IEA product nodulin MtN21 /EamA-like transporter family protein note nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G11450.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01070.2p transcript_id AT1G01070.2 protein_id AT1G01070.2p transcript_id AT1G01070.2 COOR C/38898-39054,39136-39287,39409-39814,40213-40329,40473-40597 HITS DR373232 [GenBank] TYPE ESTs EVAL e-172 LOCN Exon COOR C/38752-39056,39138-39284,39408-39602 HITS AY089039 [GenBank] TYPE Community cDNA EVAL 99.92 LOCN Exon COOR C/38753-39054,39136-39287,39409-39814,40213-40329,40473-40535,40675-40944 HITS BX816186 [GenBank] [Order] TYPE GSLT cDNA EVAL e-117 LOCN Exon COOR C/38790-39057,39139-39285,39408-39816,40215-40330,40474-40537 HITS S68296 [SALK] [About & Citation] [NCBI] [Order from ABRC] TYPE Salk cDNA EVAL 100.00 LOCN Exon COOR C/38815-39054,39136-39287,39409-39814,40213-40329,40473-40535,40675-40912 NOTE BT015826 HITS U68296 [SALK] [About & Citation] [NCBI] [Order from ABRC] TYPE Salk pUni Clone EVAL 100.00 LOCN Exon COOR C/38898-39054,39136-39287,39409-39814,40213-40329,40473-40535,40675-40877 NOTE BT020209 HITS G68296 Invitrogen/Salk Gateway clone, originally SSP/Salk pUNI clone. [pENTR223 Seq] [pENTR223 Map] [Orignal SSP/SALK U] [Order from ABRC] TYPE GateWay Clone EVAL 100.00 LOCN Exon COOR C/38898-39054,39136-39287,39409-39814,40213-40329,40473-40535,40675-40877 NOTE U68296 BT020209 pENTR_Sfi HITS 261576_at [gAtlas] TYPE Affy Probes EVAL 8e-84 LOCN Exon COOR C/38900-39056,39138-39287,39409-39550 HITS GATCACTAGTGACCATA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/39030-39046 NOTE 6 30 129 20 5 0 0 0 5 17 0 0 0 9 0 3 0 HITS CATGTTGTTGCAAC [About SAGE] TYPE SAGE Target EVAL 100 LOCN Exon COOR W/39247-39260 HITS GATCCAATCATTAACGT [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR W/39448-39464 NOTE 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 HITS DR333276 [GenBank] TYPE ESTs EVAL e-153 LOCN Exon COOR C/39516-39821,40220-40330,40474-40537 HITS BX816126 [GenBank] [Order] TYPE GSLT cDNA EVAL 0.0 LOCN Exon COOR C/40212-40328,40472-40927 HITS DR333275 [GenBank] TYPE ESTs EVAL e-146 LOCN Exon COOR C/40222-40330,40474-40534,40674-40944 NOTE EH960684 EH931186 HITS GATCATTTCGTCAGTGG [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN Exon COOR C/40482-40498 NOTE 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 HITS GATCGAAATAGGAGATA [About MPSS mRNA] TYPE MPSS mRNA Target EVAL 100.00 LOCN 300-UTR5 COOR C/40646-40662 NOTE 1 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0

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