AtTome: Genome Express Database ( Aug. 2, 2016 )


CLON DR383189[GenBank] 
TYPE ESTs
CHRO chr1
EVAL 0.0
COOR C/47483-47983,48076-48200
NOTE DR381326 BP634007 AV816207 BP569374 BP596480 BP616422 BP629438 BP670010 AV542850 EG462516 EG462517 EH919913 EH922338 AV798622 AV808865 BP644356 BP653262 ES138293 AV540196 EG500047 BP577167 DR373474 EL313824 AV787194 DR193817 AV547397 AV522256 EH858983 EL091887 EL231147 BP567044 BP583832 BP605494 BP607249 BP640268 AV539704 AV557740 AV559265 DR348210 EL174215 DR193816 BE521558 

HITS At1g01080[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01080.1 CDS gene_syn T25K16.19, T25K16_19 go_component nucleus|GO:0005634|14617066|IDA go_component chloroplast|GO:0009507|15028209|IDA go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast stroma|GO:0009570|18633119|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, nucleus, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1); Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819; Bacteria - 303967; Metazoa - 99035; Fungi - 14863; Plants - 31737; Viruses - 35534; Other Eukaryotes - 13112 (source: NCBI BLink). protein_id AT1G01080.1p transcript_id AT1G01080.1 protein_id AT1G01080.1p transcript_id AT1G01080.1 LOCN 1000-Promotor COOR C/45503-45559,45646-45954,46044-46145,46376-46789 HITS At1g01080[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01080.2 CDS gene_syn T25K16.19, T25K16_19 go_component chloroplast|GO:0009507|18431481|IDA go_function nucleotide binding|GO:0000166||IEA go_function nucleic acid binding|GO:0003676||IEA go_process biological_process|GO:0008150||ND go_function RNA binding|GO:0003723||ISS product RNA-binding (RRM/RBD/RNP motifs) family protein note RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01080.2p transcript_id AT1G01080.2 protein_id AT1G01080.2p transcript_id AT1G01080.2 LOCN 1000-Promotor COOR C/45503-45559,45646-45954,46044-46145,46373-46789 HITS At1g01090[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01090.1 CDS gene_syn PDH-E1 ALPHA, T25K16.8, T25K16_8, pyruvate dehydrogenase E1 alpha gene PDH-E1 ALPHA function pyruvate dehydrogenase E1 alpha subunit go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process glycolysis|GO:0006096||IEA go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_component plastid|GO:0009536|9393637|ISS go_process metabolic process|GO:0008152||ISS go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739|9393637|ISS go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739||ISS product pyruvate dehydrogenase E1 alpha note pyruvate dehydrogenase E1 alpha (PDH-E1 ALPHA); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity; INVOLVED IN: oxidation reduction, glycolysis, metabolic process; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017), Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y (InterPro:IPR017597); BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase complex E1 alpha subunit (TAIR:AT1G59900.1); Has 10065 Blast hits to 10059 proteins in 1888 species: Archae - 130; Bacteria - 6136; Metazoa - 517; Fungi - 241; Plants - 224; Viruses - 0; Other Eukaryotes - 2817 (source: NCBI BLink). protein_id AT1G01090.1p transcript_id AT1G01090.1 protein_id AT1G01090.1p transcript_id AT1G01090.1 LOCN Exon COOR C/47705-47982,48075-48852,48936-49166

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