AtTome: Genome Express Database ( Aug. 2, 2016 )


CLON R11265[SSP] [About & Citation] [NCBI] [Order] - click RAFL 
TYPE SSP cDNA
CHRO chr1
EVAL 97.72
COOR C/50089-50337,50419-50631,50883-50963,51126-51182
NOTE AY050975

HITS At1g01090[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01090.1 CDS gene_syn PDH-E1 ALPHA, T25K16.8, T25K16_8, pyruvate dehydrogenase E1 alpha gene PDH-E1 ALPHA function pyruvate dehydrogenase E1 alpha subunit go_component chloroplast|GO:0009507|18431481|IDA go_component chloroplast envelope|GO:0009941|12938931|IDA go_process glycolysis|GO:0006096||IEA go_process metabolic process|GO:0008152||IEA go_process oxidation reduction|GO:0055114||IEA go_component plastid|GO:0009536|9393637|ISS go_process metabolic process|GO:0008152||ISS go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739|9393637|ISS go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739||ISS product pyruvate dehydrogenase E1 alpha note pyruvate dehydrogenase E1 alpha (PDH-E1 ALPHA); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity; INVOLVED IN: oxidation reduction, glycolysis, metabolic process; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017), Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y (InterPro:IPR017597); BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase complex E1 alpha subunit (TAIR:AT1G59900.1); Has 10065 Blast hits to 10059 proteins in 1888 species: Archae - 130; Bacteria - 6136; Metazoa - 517; Fungi - 241; Plants - 224; Viruses - 0; Other Eukaryotes - 2817 (source: NCBI BLink). protein_id AT1G01090.1p transcript_id AT1G01090.1 protein_id AT1G01090.1p transcript_id AT1G01090.1 LOCN 1000-Promotor COOR C/47705-47982,48075-48852,48936-49166 HITS At1g01100[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01100.1 CDS gene_syn T25K16.9, T25K16_9 go_component plasma membrane|GO:0005886|17317660|IDA go_component cytosolic ribosome|GO:0022626|15734919|IDA go_process translational elongation|GO:0006414||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translational elongation|GO:0006414||ISS go_function structural constituent of ribosome|GO:0003735||ISS product 60S acidic ribosomal protein family note 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76; Bacteria - 0; Metazoa - 858; Fungi - 474; Plants - 451; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink). protein_id AT1G01100.1p transcript_id AT1G01100.1 protein_id AT1G01100.1p transcript_id AT1G01100.1 LOCN Exon COOR C/50284-50337,50419-50631,50883-50954 HITS At1g01100[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01100.2 CDS gene_syn T25K16.9, T25K16_9 go_component plasma membrane|GO:0005886|17317660|IDA go_component cytosolic ribosome|GO:0022626|15734919|IDA go_process translational elongation|GO:0006414||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translational elongation|GO:0006414||ISS go_function structural constituent of ribosome|GO:0003735||ISS product 60S acidic ribosomal protein family note 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76; Bacteria - 0; Metazoa - 858; Fungi - 474; Plants - 451; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink). protein_id AT1G01100.2p transcript_id AT1G01100.2 protein_id AT1G01100.2p transcript_id AT1G01100.2 LOCN Exon COOR C/50284-50337,50419-50631,50883-50954 HITS At1g01100[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01100.3 CDS gene_syn T25K16.9, T25K16_9 go_component plasma membrane|GO:0005886|17317660|IDA go_process translational elongation|GO:0006414||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translational elongation|GO:0006414||ISS go_function structural constituent of ribosome|GO:0003735||ISS product 60S acidic ribosomal protein family note 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 1446 Blast hits to 1446 proteins in 306 species: Archae - 3; Bacteria - 0; Metazoa - 542; Fungi - 379; Plants - 324; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink). protein_id AT1G01100.3p transcript_id AT1G01100.3 protein_id AT1G01100.3p transcript_id AT1G01100.3 LOCN Exon COOR C/50284-50337,50419-50447,50496-50631,50883-50954 HITS At1g01100[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01100.4 CDS gene_syn T25K16.9, T25K16_9 go_component plasma membrane|GO:0005886|17317660|IDA go_process translational elongation|GO:0006414||IEA go_function structural constituent of ribosome|GO:0003735||IEA go_component nucleus|GO:0005634|18433157|IDA go_component cytosol|GO:0005829|18433157|IDA go_component ribosome|GO:0005840||ISS go_component cytosolic ribosome|GO:0022626|17934214|IDA go_process translational elongation|GO:0006414||ISS go_function structural constituent of ribosome|GO:0003735||ISS product 60S acidic ribosomal protein family note 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76; Bacteria - 0; Metazoa - 858; Fungi - 474; Plants - 451; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink). protein_id AT1G01100.4p transcript_id AT1G01100.4 protein_id AT1G01100.4p transcript_id AT1G01100.4 LOCN Exon COOR C/50284-50337,50419-50631,50883-50954

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