AtTome: Genome Express Database ( Aug. 2, 2016 )


CLON 261572_at[gAtlas] 
TYPE Affy Probes
CHRO chr1
EVAL 2e-76
COOR C/74109-74252,74340-74423

HITS At1g01160[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG] 
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01160.1 CDS gene_syn F6F3.29, GIF2, GRF1-interacting factor 2 gene GIF2 function Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA go_component nucleus|GO:0005634|15326298|ISS go_process cell proliferation|GO:0008283|19648231|IEP go_process leaf development|GO:0048366|19648231|IMP go_function transcription coactivator activity|GO:0003713|12974814|ISS go_function protein binding|GO:0005515|15326298|IPI product GRF1-interacting factor 2 note GRF1-interacting factor 2 (GIF2); CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 3 (TAIR:AT4G00850.1); Has 425 Blast hits to 425 proteins in 91 species: Archae - 0; Bacteria - 4; Metazoa - 291; Fungi - 20; Plants - 89; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). protein_id AT1G01160.1p transcript_id AT1G01160.1 protein_id AT1G01160.1p transcript_id AT1G01160.1 LOCN 300-UTR3 COOR W/72583-72669,73087-73163,73287-73395,73488-73740,73822-73883 HITS At1g01160[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01160.2 CDS gene_syn F6F3.29, GIF2, GRF1-interacting factor 2 gene GIF2 function Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA go_component nucleus|GO:0005634|15326298|ISS go_process cell proliferation|GO:0008283|19648231|IEP go_process leaf development|GO:0048366|19648231|IMP go_function transcription coactivator activity|GO:0003713|12974814|ISS go_function protein binding|GO:0005515|15326298|IPI product GRF1-interacting factor 2 note GRF1-interacting factor 2 (GIF2); FUNCTIONS IN: protein binding, transcription coactivator activity; INVOLVED IN: cell proliferation, leaf development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 3 (TAIR:AT4G00850.1); Has 35 Blast hits to 35 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_id AT1G01160.2p transcript_id AT1G01160.2 protein_id AT1G01160.2p transcript_id AT1G01160.2 LOCN 300-UTR3 COOR W/72583-72669,72915-73016,73087-73163,73287-73395,73488-73740,73822-73883 HITS At1g01170[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01170.1 CDS gene_syn F6F3.32 go_component mitochondrion|GO:0005739|15276431|IDA go_component membrane|GO:0016020|17432890|IDA go_process response to stress|GO:0006950||ISS go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1138) note Protein of unknown function (DUF1138); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1138 (InterPro:IPR009515); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1138) (TAIR:AT4G00860.1); Has 86 Blast hits to 86 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_id AT1G01170.1p transcript_id AT1G01170.1 protein_id AT1G01170.1p transcript_id AT1G01170.1 LOCN Exon COOR C/74105-74250,74338-74443 HITS At1g01170[Seq] [Transcriptome] [RiceGE] [SNP Search] [gAtlas] [GO] [NCBI] [NCBI Map] [TAIR] [MIPS] [MPSS] [AMPDB/SUBA] [KEGG]
[Protein Interaction] [TIGR] [Synteny Gene Pairs] [AtGene Express] [AtGDB View] [e-FP Browser] [NASCArrays Digital Northern]
[YE Clone] [NASCArrays Spot History] [Genevestigator Gene Atlas Gene Chronologer Response Viewer] [POGs] [AthaMap]
[Phosphat] [Methylome] [UToronto BAR Expression Angler NASCArrays BADB Hormone Stress Pathogen Tissue Ext Tissue] TYPE Gene TITL AT1G01170.2 CDS gene_syn F6F3.32 go_component membrane|GO:0016020|17432890|IDA go_process response to stress|GO:0006950||ISS go_function molecular_function|GO:0003674||ND product Protein of unknown function (DUF1138) note Protein of unknown function (DUF1138); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1138 (InterPro:IPR009515); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1138) (TAIR:AT4G00860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_id AT1G01170.2p transcript_id AT1G01170.2 protein_id AT1G01170.2p transcript_id AT1G01170.2 LOCN Exon COOR C/74105-74250,74338-74443

hits since Aug 25, 2007 | T-DNA Express | Transcriptome | RiceGE japonica | RiceGE indica | Methylome | YeastGE |
© SIGnAL 2000-2016 | Home | About Us | Microarray | FL-cDNA | SALK T-DNA | Contact Us |