RiceGE: Genome Express Database ( Jan. 16, 2018 )


CLON P0672D08[GenBank] 
TYPE Rice BACs
CHRO chr01
EVAL 0.0
COOR W/1-173729

HITS Os01g01010[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL TBC domain containing protein, expressed (PASA (rice_release4_08302005) ALT-SPLICE: Added alt splice isoform to 12001.t00001 = 12001.m42814); (PASA (rice_release4_08302005) AUTOUPDATE: Updated structure of 12001.m06748.) ;
LOCN Exon
COOR W/251-418,1159-1257,2259-2362,3938-4746,4830-4952,5034-5122,5210-5410,6012-6113,6906-6989,7034-7046,7306-7364
HITS Os01g01019[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL expressed protein
LOCN Exon
COOR W/8600-8862,8954-9119
HITS Os01g01030[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL monocopper oxidase precursor, putative, expressed PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m06750 (update, updateIDs: 2, (gene: 12001.t00003, model: 12001.m06750)); (PASA (rice_release4_08302005) AUTOUPDATE: Updated structure of 12001.m06750.) ; (PASA (r
LOCN Exon
COOR W/9576-10615,10708-11073,11161-11239,11771-11973,12068-12161
HITS Os01g01040[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL expressed protein (PASA (rice_osa1r5_gmapsim4_05232006) ALT-SPLICE: Added alt splice isoform to 12001.t00004 = 12001.m150453); (PASA (rice_osa1r5_gmapsim4_05232006) ALT-SPLICE: Added alt splice isoform to 12001.t00004 = 12001.m150452); (PASA (rice_osa1r5_gm
LOCN Exon
COOR W/13401-13778,14185-14276,14360-15060,15303-15373,15770-15859,15944-16123,16333-16395
HITS Os01g01040[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL expressed protein (PASA (rice_osa1r5_gmapsim4_05232006) ALT-SPLICE: Added alt splice isoform to 12001.t00004 = 12001.m150453); (PASA (rice_osa1r5_gmapsim4_05232006) ALT-SPLICE: Added alt splice isoform to 12001.t00004 = 12001.m150452); (PASA (rice_osa1r5_gm
LOCN Exon
COOR W/13401-13778,14185-14276,14360-15074
HITS Os01g01050[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL R3H domain containing protein, expressed PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m42816 (update, updateIDs: 123099, (gene: 12001.t00005, model: 12001.m42816)); PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m06752 (
LOCN Exon
COOR W/20034-20083,20374-20649,20764-20835,21294-21379,22247-22321,22685-23193
HITS Os01g01050[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL R3H domain containing protein, expressed PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m42816 (update, updateIDs: 123099, (gene: 12001.t00005, model: 12001.m42816)); PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m06752 (
LOCN Exon
COOR W/20060-20083,20417-20649,20764-20835,21294-21379,22247-22321,22685-23193
HITS Os01g01060[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL 40S ribosomal protein S5, putative, expressed PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m06753 (update, updateIDs: 5, (gene: 12001.t00006, model: 12001.m06753)); (PASA (rice_release4_08302005) ALT-SPLICE: Added alt splice isoform to 12001.t00006 = 120
LOCN Exon
COOR W/24023-24088,24172-24443,24892-25095,25167-25221
HITS Os01g01060[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL 40S ribosomal protein S5, putative, expressed PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m06753 (update, updateIDs: 5, (gene: 12001.t00006, model: 12001.m06753)); (PASA (rice_release4_08302005) ALT-SPLICE: Added alt splice isoform to 12001.t00006 = 120
LOCN Exon
COOR W/24023-24094,24172-24443,24892-25095,25167-25221
HITS Os01g01070[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL expressed protein (PASA (rice_release4_08302005) ALT-SPLICE: Added alt splice isoform to 12001.t00007 = 12001.m42818); (PASA (rice_release4_08302005) AUTOUPDATE: Updated structure of 12001.m06754.) ;
LOCN Exon
COOR W/26742-26778,26948-27030,27537-27608,27687-27765,28060-28127,28307-28408,29179-29268,29344-29418,29514-29546,29630-29710,30079-30132,30202-30273,30345-30419,30777-30926
HITS Os01g01070[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL expressed protein (PASA (rice_release4_08302005) ALT-SPLICE: Added alt splice isoform to 12001.t00007 = 12001.m42818); (PASA (rice_release4_08302005) AUTOUPDATE: Updated structure of 12001.m06754.) ;
LOCN Exon
COOR W/26742-26778,26948-27030,27537-27608,27687-27765,28060-28133,28307-28408,29179-29268,29344-29418,29514-29546,29630-29710,30079-30132,30202-30273,30345-30419,30777-30926
HITS Os01g01080[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL sphingosine-1-phosphate lyase, putative, expressed (PASA (rice_osa1r5_gmapsim4_05232006) ALT-SPLICE: Added alt splice isoform to 12001.t00008 = 12001.m150454); (PASA (rice_osa1r5_gmapsim4_05232006) ALT-SPLICE: Added alt splice isoform to 12001.t00008 = 12001.m100000); PASA (rice_osa1r5_gma
LOCN Exon
COOR W/32545-32741,32829-32874,33319-33470,33620-33679,34396-34620,34694-34835,35078-35128,35236-35327,36121-36247,36355-36370,36741-36848,36937-36991,37258-37404,37505-37583,37687-37809
HITS Os01g01080[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL sphingosine-1-phosphate lyase, putative, expressed (PASA (rice_osa1r5_gmapsim4_05232006) ALT-SPLICE: Added alt splice isoform to 12001.t00008 = 12001.m150454); (PASA (rice_osa1r5_gmapsim4_05232006) ALT-SPLICE: Added alt splice isoform to 12001.t00008 = 12001.m100000); PASA (rice_osa1r5_gma
LOCN Exon
COOR W/33678-33679,34396-34620,34694-34835,35078-35128,35236-35327,36121-36247,36355-36370,36741-36848,36937-36991,37258-37404,37505-37583,37687-37809
HITS Os01g01090[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL retrotransposon protein, putative, unclassified
LOCN Exon
COOR W/41397-41999,42078-42281,42368-42657,42722-43098,43176-43363,43438-43627,43699-43803,43877-44328
HITS Os01g01100[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL retrotransposon protein, putative, Ty3-gypsy subclass
LOCN Exon
COOR C/44658-45747,46666-47734,47825-49124,49191-49464,49931-50214
HITS Os01g01110[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL conserved hypothetical protein
LOCN Exon
COOR W/52716-52720,53886-54774
HITS Os01g01120[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL E-1 enzyme, putative, expressed PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m97447 (update, updateIDs: 9, (gene: 12001.t00012, model: 12001.m97447)); PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m06759 (updat
LOCN Exon
COOR W/58906-59097,59187-59707,59798-59916,60050-60147
HITS Os01g01130[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL snurportin-1, putative, expressed PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m06760 (update, updateIDs: 123108, (gene: 12001.t00013, model: 12001.m06760)); (PASA (rice_release4_08302005) AUTOUPDATE: Updated structure of 12001.m06760.) ;
LOCN Exon
COOR C/60472-60585,60679-60822,61141-61233,61467-61581,61704-61954,62050-62233,62430-62464
HITS Os01g01140[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL hypothetical protein
LOCN Exon
COOR W/66477-66764,66829-66933
HITS Os01g01150[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL nucleic acid binding protein, putative, expressed (PASA (rice_osa1r5_gmapsim4_05232006) ALT-SPLICE: Added alt splice isoform to 12001.t00015 = 12001.m150455); (PASA (rice_osa1r5_gmapsim4_05232006) ALT-SPLICE: Added alt splice isoform to 12001.t00015 = 12001.m100000); PASA (rice_osa1r5_gma
LOCN Exon
COOR W/69705-70737,71270-71783,72421-73810
HITS Os01g01160[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL chaperone protein dnaJ 20, chloroplast precursor, putative, expressed PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m06763 (update, updateIDs: 123112, (gene: 12001.t00016, model: 12001.m06763)); (PASA (rice_release4_08302005) AUTOUPDATE: Updated structure of 12001.m06763.) ;
LOCN Exon
COOR W/79309-79734,80520-80666
HITS Os01g01170[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL expressed protein (PASA (rice_release4_08302005) AUTOUPDATE: Updated structure of 12001.m06764.) ;
LOCN Exon
COOR W/82181-82402,82539-82632,82737-82888,83014-83101,83201-84483,85093-85200,85302-85385
HITS Os01g01180[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL expressed protein
LOCN Exon
COOR C/85788-86006
HITS Os01g01190[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL hydrolase, acting on ester bonds, putative, expressed PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m06766 (update, updateIDs: 13, (gene: 12001.t00019, model: 12001.m06766)); (PASA (rice_release4_08302005) AUTOUPDATE: Updated structure of 12001.m06766.) ;
LOCN Exon
COOR C/86627-88270
HITS Os01g01200[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL retrotransposon protein, putative, unclassified
LOCN Exon
COOR W/92301-92907,93099-93223,93291-93482,93553-93611,93686-94450,94530-94683,94890-95360
HITS Os01g01210[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL retrotransposon protein, putative, unclassified
LOCN Exon
COOR C/95973-96595,97468-97483
HITS Os01g01230[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL transposon protein, putative, unclassified
LOCN Exon
COOR W/102674-103336
HITS Os01g01240[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL retrotransposon protein, putative, Ty3-gypsy subclass
LOCN Exon
COOR W/105420-105487,107018-107063,107211-111785
HITS Os01g01250[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL transposon protein, putative, unclassified
LOCN Exon
COOR W/114883-115499,115592-117473
HITS Os01g01260[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL transposon protein, putative, unclassified
LOCN Exon
COOR C/118104-121832,121905-124259
HITS Os01g01270[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL retrotransposon protein, putative, unclassified
LOCN Exon
COOR C/125699-125987,126292-126602,126672-126988,127226-128261,128376-128757,128857-130361
HITS Os01g01280[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL expressed protein PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m06774 (update, updateIDs: 14, (gene: 12001.t00027, model: 12001.m06774)); (PASA (rice_release4_08302005) AUTOUPDATE: Updated structure of 12001.m06774.) ;
LOCN Exon
COOR W/131113-131417,131500-131626,131714-132055
HITS Os01g01290[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL histone-like transcription factor and archaeal histone family protein, expressed PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m06775 (update, updateIDs: 123114, (gene: 12001.t00028, model: 12001.m06775)); (PASA (rice_release4_08302005) AUTOUPDATE: Updated structure of 12001.m06775.) ;
LOCN Exon
COOR W/136952-138217
HITS Os01g01295[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL expressed protein PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m42534 (update, updateIDs: 15, (gene: 12001.t06777, model: 12001.m42534)); (PASA (rice_release4_08302005) GENE_SPLIT: new gene added as part of gene split operatio
LOCN Exon
COOR W/138886-139433,139993-140233,140365-140482,140619-140710
HITS Os01g01302[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL shikimate kinase family protein, expressed PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m06776 (update, updateIDs: 17, (gene: 12001.t00029, model: 12001.m06776)); (PASA (rice_release4_08302005) GENE_SPLIT: update to 12001.m06776 as part of gene splitt
LOCN Exon
COOR W/142447-142588,142707-142753,142830-142884,142981-143141,143252-143334,143413-143521,143908-143986,144113-144177,144309-144377
HITS Os01g01307[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL translocon-associated protein beta containing protein, expressed PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m42517 (update, updateIDs: 20, (gene: 12001.t06760, model: 12001.m42517)); (PASA (rice_release4_08302005) GENE_SPLIT: new gene added as part of gene split operatio
LOCN Exon
COOR W/144949-145115,146252-146350,146436-146544,146658-146729,146858-146863,146954-147073
HITS Os01g01312[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL retrotransposon protein, putative, Ty1-copia subclass, expressed PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m06777 (update, updateIDs: 21, (gene: 12001.t00030, model: 12001.m06777)); (PASA (rice_release4_08302005) GENE_SPLIT: update to 12001.m06777 as part of gene splitt
LOCN Exon
COOR W/148625-148717,148850-149341,149431-149827,149980-151448,151812-152252,152345-153016
HITS Os01g01320[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL retrotransposon protein, putative, unclassified
LOCN Exon
COOR C/154530-154841,155020-155538,155572-156584,156780-157743
HITS Os01g01330[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL retrotransposon protein, putative, Ty1-copia subclass, expressed (PASA (rice_release4_08302005) AUTOUPDATE: Updated structure of 12001.m06779.) ;
LOCN Exon
COOR C/158167-158570,160091-160427
HITS Os01g01340[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL light-induced protein 1-like, putative, expressed PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m42821 (update, updateIDs: 123119, (gene: 12001.t00033, model: 12001.m42821)); PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m06780 (
LOCN Exon
COOR C/166401-166458,166553-166711,166893-167062
HITS Os01g01340[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL light-induced protein 1-like, putative, expressed PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m42821 (update, updateIDs: 123119, (gene: 12001.t00033, model: 12001.m42821)); PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m06780 (
LOCN Exon
COOR C/166549-166711,166893-167062
HITS Os01g01350[Seq] [RiceGE] [RiceGE Text] [Rice GO] [Gramene] [SNP] [Microarray: RMOS|GEO] [TIGR Evidence] 
TYPE Gene
TITL charged multivesicular body protein 5, putative, expressed PASA (rice_osa1r5_gmapsim4_05232006) AUTOUPDATE: Updated structure of 12001.m06781 (update, updateIDs: 23, (gene: 12001.t00034, model: 12001.m06781)); (PASA (rice_release4_08302005) AUTOUPDATE: Updated structure of 12001.m06781.) ;
LOCN Exon
COOR C/167847-167897,168208-168356,168566-168677,169200-169271,169380-169473,169572-169723,169806-169874



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