RiceGE: Gene Expression Atlas Data Sources ( Aug. 18, 2010 )

1. GSE7951: Genome-wide gene expression profiling of rice stigma [Oryza sativa]
     GSM195218: stigma 1, biological rep1
GSM195219: stigma 2, biological rep 2
GSM195220: stigma 3, biological rep 2
GSM195221: Ovary 1, biological rep 1
GSM195222: Ovary 2, biological rep 2
GSM195223: Ovary 3, biological rep 3
GSM195224: Suspension cell *
GSM195225: Shoot *
GSM195226: Root *
GSM195227: Anther *
GSM195228: Embryo *
GSM195229: Endosperm *
GSM195230: 5d-seed *
* Exculded (no reps).
2. GSE6893: Expression data for reproductive development in rice [Oryza sativa]
     GSM159177: Root, 7-day-old Seedling, biological rep 1
GSM159178: Root, 7-day-old Seedling, biological rep 2
GSM159179: Root, 7-day-old Seedling, biological rep 3
GSM159180: Mature leaf, biological rep 1
GSM159181: Mature leaf, biological rep 2
GSM159182: Mature leaf, biological rep 3
GSM159183: Y Leaf, biological rep 1
GSM159184: Y Leaf, biological rep 2
GSM159185: Y Leaf, biological rep 3
GSM159186: SAM, biological rep 1
GSM159187: SAM, biological rep 2
GSM159188: SAM, biological rep 3
GSM159189: Young inflorescence (P1, upto 3 cm), biological rep 1
GSM159190: Young inflorescence (P1, upto 3 cm), biological rep 2
GSM159191: Young inflorescence (P1, upto 3 cm), biological rep 3
GSM159192: Inflorescence (P2, 3 - 5 cm), biological rep 1
GSM159193: Inflorescence (P2, 3 - 5 cm), biological rep 2
GSM159194: Inflorescence (P2, 3 - 5 cm), biological rep 3
GSM159195: Inflorescence (P3, 5 - 10 cm), biological rep 1
GSM159196: Inflorescence (P3, 5 - 10 cm), biological rep 2
GSM159197: Inflorescence (P3, 5 - 10 cm), biological rep 3
GSM159198: Inflorescence (P4, 10 - 15 cm), biological rep 1
GSM159199: Inflorescence (P4, 10 - 15 cm), biological rep 2
GSM159200: Inflorescence (P4, 10 - 15 cm), biological rep 3
GSM159201: Inflorescence (P5, 15 - 22 cm), biological rep 1
GSM159202: Inflorescence (P5, 15 - 22 cm), biological rep 2
GSM159203: Inflorescence (P5, 15 - 22 cm), biological rep 3
GSM159204: Inflorescence (P6, 22 - 30 cm), biological rep 1
GSM159205: Inflorescence (P6, 22 - 30 cm), biological rep 2
GSM159206: Inflorescence (P6, 22 - 30 cm), biological rep 3
GSM159207: Seed (S1, 0 - 2 dap), biological rep 1
GSM159208: Seed (S1, 0 - 2 dap), biological rep 2
GSM159209: Seed (S1, 0 - 2 dap), biological rep 3
GSM159210: Seed (S2, 3 - 4 dap), biological rep 1
GSM159211: Seed (S2, 3 - 4 dap), biological rep 2
GSM159212: Seed (S2, 3 - 4 dap), biological rep 3
GSM159213: Seed (S3, 5 - 10 dap), biological rep 1
GSM159214: Seed (S3, 5 - 10 dap), biological rep 2
GSM159215: Seed (S3, 5 - 10 dap), biological rep 3
GSM159216: Seed (S4, 11 - 20 dap), biological rep 1
GSM159217: Seed (S4, 11 - 20 dap), biological rep 2
GSM159218: Seed (S4, 11 - 20 dap), biological rep 3
GSM159219: Seed (S5, 21 - 29 dap), biological rep 1
GSM159220: Seed (S5, 21 - 29 dap), biological rep 2
GSM159221: Seed (S5, 21 - 29 dap), biological rep 3
3. GSE6901: Expression data for stress treatment in rice seedlings [Oryza sativa]
     GSM159259: 7-day-old Seedling, biological rep 1
GSM159260: 7-day-old Seedling, biological rep 2
GSM159261: 7-day-old Seedling, biological rep 3
GSM159262: Drought stress, biological rep 1
GSM159263: Drought stress, biological rep 2
GSM159264: Drought stress, biological rep 3
GSM159265: Salt stress, biological rep 1
GSM159266: Salt stress, biological rep 2
GSM159267: Salt stress, biological rep 3
GSM159268: Cold stress, biological rep 1
GSM159269: Cold stress, biological rep 2
GSM159270: Cold stress, biological rep 3
4. GSE7197: Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice [Oryza sativa]
     GSM173080: Rice MH63 Control2
GSM173086: Rice MH63 Control1
GSM173089: Rice MH63 Control3
GSM173091: Rice OsSRT1 RNAi transgenic line LM1
GSM173093: Rice OsSRT1 RNAi transgenic line LM2
GSM173094: Rice OsSRT1 RNAi transgenic line LM3
5. GSE6908: Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile [Oryza sativa]
     GSM159172: Rice coleoptiles, 4 days old, aerobic, rep N.1 (sample#9)
GSM159173: Rice coleoptiles, 4 days old, aerobic, rep N.2 (sample#10)
GSM159271: Rice coleoptiles, 4 days old, anoxic, Rep 1 (Sample #11)
GSM159272: Rice coleoptiles, 4 days old, anoxic, Rep 2 (Sample #12)
6. GSE6737: Over-expression of a Type-A Response Regulator Alters Rice Morphology and Cytokinin Metabolism [Oryza sativa]
     GSM154829: Root_DMSO-treatment_30min_rep 1
GSM154831: Root_DMSO-treatment_30min_rep 2
GSM154832: Root_DMSO-treatment_30min_rep 3
GSM154833: Root_tZ-treatment_30min_rep 1
GSM154937: Root_tZ-treatment_30min_rep 2
GSM154938: Root_tZ-treatment_30min_rep 3
GSM154939: Root_DMSO-treatment_120min_rep 1
GSM154940: Root_DMSO-treatment_120min_rep 2
GSM154941: Root_DMSO-treatment_120min_rep 3
GSM154942: Root_tZ-treatment_120min_rep 1
GSM154943: Root_tZ-treatment_120min_rep 2
GSM154944: Root_tZ-treatment_120min_rep 3
GSM154945: Leaf_DMSO-treatment_30min_rep 1
GSM154946: Leaf_DMSO-treatment_30min_rep 2
GSM154947: Leaf_DMSO-treatment_30min_rep 3
GSM154948: Leaf_tZ-treatment_30min_rep 1
GSM154949: Leaf_tZ-treatment_30min_rep 2
GSM154950: Leaf_tZ-treatment_30min_rep 3
GSM154951: Leaf_DMSO-treatment_120min_rep 1
GSM154952: Leaf_DMSO-treatment_120min_rep 2
GSM154953: Leaf_DMSO-treatment_120min_rep 3
GSM154954: Leaf_tZ-treatment_120min_rep 1
GSM154955: Leaf_tZ-treatment_120min_rep 2
GSM154956: Leaf_tZ-treatment_120min_rep 3
GSM154957: Leaf_control_rep 1
GSM154958: Leaf_control_rep 2
GSM154959: Leaf_OsRR6-overexpressor_rep 1
GSM154960: Leaf_OsRR6-overexpressor_rep 2
7. GSE4438: Expression data from rice under salinity stress [Oryza sativa Oryza sativa (indica cultivar-group) Oryza sativa (japonica cultivar-group)]
     GSM99858: TCHW P1_m103 control, biological rep1
GSM99859: TCHW P2_m103 control, biological rep2
GSM99860: TCHW P3_m103 control, biological rep3
GSM99861: TCHW P4_m103 salt stress, biological rep1
GSM99862: TCHW P5_m103 salt stress, biological rep2
GSM99863: TCHW P6_m103 salt stress, biological rep3
GSM99864: TCHW P7_ir29 control, biological rep1
GSM99865: TCHW P8_ir29 control, biological rep2
GSM99866: TCHW P9_ir29 control, biological rep3
GSM99867: TCHW P10_ir29 salt stress, biological rep1
GSM99868: TCHW P11_ir29 salt stress, biological rep2
GSM99869: TCHW P12_ir29 salt stress, biological rep3
GSM99870: TCHW P13_agami control, biological rep1
GSM99871: TCHW P14_agami control, biological rep2
GSM99872: TCHW P15_agami control, biological rep3
GSM99873: TCHW P16_agami salt stress, biological rep1
GSM99874: TCHW P17_agami salt stress, biological rep2
GSM99875: TCHW P18_agami salt stress, biological rep3
GSM99877: TCHW P19_ir29 control, biological rep1
GSM99878: TCHW P20_ir29 control, biological rep2
GSM99879: TCHW P21_ir29 control, biological rep3
GSM99880: TCHW P22_ir29 salt stress, biological rep1
GSM99881: TCHW P23_ir29 salt stress, biological rep2
GSM99882: TCHW P24_ir29 salt stress, biological rep3
8. GSE4471: Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate [Oryza sativa]
     GSM100439: Rice Azucena 0ppm Arsenate (Control) Rep1
GSM100440: Rice Azucena 0ppm Arsenate (Control) Rep2
GSM149409: Rice Azucena 0ppm Arsenate (Control) Rep3
GSM100441: Rice Azucena 1ppm Arsenate Rep1
GSM100442: Rice Azucena 1ppm Arsenate Rep2
GSM149410: Rice Azucena 1ppm Arsenate Rep3
GSM100443: Rice Bala 0ppm Arsenate (Control) Rep1
GSM100444: Rice Bala 0ppm Arsenate (Control) Rep2
GSM149411: Rice Bala 0ppm Arsenate (Control) Rep3
GSM100445: Rice Bala 1ppm Arsenate Rep1
GSM100446: Rice Bala 1ppm Arsenate Rep2
GSM149412: Rice Bala 1ppm Arsenate Rep3
9. GSE3053: Rice salt expression [Oryza sativa Oryza sativa (indica cultivar-group)]
     GSM67052: FL478 control rep 1
GSM67053: FL478 control rep 2
GSM67054: FL478 control rep 3
GSM67055: FL478 salt stressed rep 1
GSM67056: FL478 salt stressed rep 2
GSM67057: FL478 salt stressed rep 3
GSM67058: IR29 control rep 1
GSM67059: IR29 control rep 2
GSM67060: IR29 salt stressed rep 1
GSM67061: IR29 salt stressed rep 2
GSM67062: IR29 salt stressed rep 3 <
10. GSE661: ABA or GA calli treatment [Oryza sativa]
     GSM9853: 50uM ABA_24
GSM9854: 50uM ABA_20
GSM9855: 50uM ABA_19
GSM9856: 50uM ABA_23
GSM9857: 50uM GA_04
GSM9858: 50uM GA_05
GSM9859: 50uM GA_07
GSM9860: 50uM GA_08
NOTE: The Platform for GSE 1-9 is [GPL2025], and [GPL477] for GSE 10.

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